View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_low_12 (Length: 406)
Name: NF18521_low_12
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 48650812 - 48651183
Alignment:
| Q |
18 |
attaatctcatccgtaaatatttatttttacaagaaacatgtccgaacttttgtatgtaaccttgaagatttgtttattgattttatgtatgtattttaa |
117 |
Q |
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| T |
48650812 |
attaatctcatccgtaaatatttatttttacaagaaacatgtccgaacttttgtatgtaaccttgaagatttgtttattgattttatgtatgtattttaa |
48650911 |
T |
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| Q |
118 |
agtgacagtttgtctttgtgggtgtggaatattgataggtacagttagcacgggtgaatgcttcaaaagggtagtggtctgagtcagagtcaaagtcaga |
217 |
Q |
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| T |
48650912 |
agtgacagtttgtctttgtgggtgtggaatattgataggtacagttggcacgggtgaatgcttcaaaagggtagtggtctgagtcag------agtcaga |
48651005 |
T |
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| Q |
218 |
gtcaaaggagagggacgtgatcgtgaatgcacgcagctacattattatttcatctgttctgcatctgcattcggattctttattatgtatttttaatcct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48651006 |
gtcaaaggagagggacgtgatcgtgaatgcacgcagctacattattatttcatctgttctgcatctgcattcggattctttattat-tatttttaatcct |
48651104 |
T |
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| Q |
318 |
aggtgtttcatttcattcatcagattctttctttcattatctctc-taacttctcagcgtgagctgtgaattgtttcat |
395 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
48651105 |
aggtgtttcatttcattcatcatattctttctttcattatctctcttaacttctcagcgtgagctgtgaattgtttcat |
48651183 |
T |
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