View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_low_13 (Length: 381)
Name: NF18521_low_13
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_low_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 381
Target Start/End: Complemental strand, 446390 - 446025
Alignment:
| Q |
16 |
atcaatggttaaggttttattaaattaatatactgattgggtatttgaactttccggtctaaaatcaatgatcgagatccattactgcatataactgctc |
115 |
Q |
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| T |
446390 |
atcaatggttaaggttttattaaattaatatactgattgggtatttgaactttccggtctaaaatcaatgatcgagatccattactgcatataactgctc |
446291 |
T |
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| Q |
116 |
ctagataaggtactaaaaatgacccacatacctactaatgaagaaccaccaataggaattgaacacaaacacatgatgttgtttgatcctactagttaag |
215 |
Q |
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| T |
446290 |
ctagataaggtactaaaaatgacccacatacctactaatgaagaaccactaataggaattgaacacaaacacatgatgttgtttgatcctactagttaag |
446191 |
T |
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| Q |
216 |
cttatcttcataggagacacatgatatattttgtctaaatataaatcattaaatggagatattttcgaaggaataggagattgcagtagttaccaatggc |
315 |
Q |
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| T |
446190 |
cttatcttcataggagacacatgatatattttgtctaaacataaatcattaaatggagatattttcgaaggaataggagattgcagtagttaccaatggc |
446091 |
T |
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| Q |
316 |
atgcgaatgcatatctccctgactgcatttagtccagcagtgaagacctaaaaatatcactcaaac |
381 |
Q |
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| T |
446090 |
atgcgaatgcatatctccctgactgcatttagtccagcagtgaagacctaaaaatatcactcaaac |
446025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 238 - 374
Target Start/End: Original strand, 464165 - 464301
Alignment:
| Q |
238 |
gatatattttgtctaaatataaatcattaaatggagatattttcgaaggaataggagattgcagtagttaccaatggcatgcgaatgcatatctccctga |
337 |
Q |
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| T |
464165 |
gatatattttatcaaaacatgaatcattaaatgcagatatttcaaaatgaatagtagattgcagtagttaccattggcatgcggatgcatatctcccgga |
464264 |
T |
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| Q |
338 |
ctgcatttagtccagcagtgaagacctaaaaatatca |
374 |
Q |
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| T |
464265 |
cagcgtttagtccaatagtgatggcctaaaaatatca |
464301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 39113276 - 39113335
Alignment:
| Q |
299 |
cagtagttaccaatggcatgcgaatgcatatctccctgactgcatttagtccagcagtga |
358 |
Q |
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| T |
39113276 |
cagtacttaccagtggcatacgcaggcatatctccctgactgcatttattccaacagtga |
39113335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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