View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18521_low_17 (Length: 338)

Name: NF18521_low_17
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18521_low_17
NF18521_low_17
[»] chr7 (4 HSPs)
chr7 (16-321)||(3233901-3234207)
chr7 (138-315)||(3179356-3179533)
chr7 (173-321)||(3214290-3214438)
chr7 (240-293)||(37960353-37960406)
[»] scaffold0042 (1 HSPs)
scaffold0042 (233-304)||(11226-11297)
[»] scaffold0534 (1 HSPs)
scaffold0534 (234-304)||(9142-9212)
[»] chr2 (1 HSPs)
chr2 (234-304)||(28049887-28049957)
[»] chr5 (1 HSPs)
chr5 (234-304)||(12634289-12634359)
[»] scaffold0599 (1 HSPs)
scaffold0599 (242-295)||(3311-3364)
[»] chr3 (1 HSPs)
chr3 (242-295)||(11911617-11911670)
[»] chr1 (1 HSPs)
chr1 (234-304)||(19851581-19851651)
[»] chr8 (1 HSPs)
chr8 (241-293)||(17231176-17231228)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 3234207 - 3233901
Alignment:
Q  16 attagagtgcgtttgcaacaatttaatctcacattctcatccttacggagtcgagaagacttt-attaccttacaattatctacgtaccatattatacaa 114  Q
    ||||||||| ||||||||| |||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  3234207 attagagtgtgtttgcaacgatttaatctcacattctcgttcttacggagtcgagaagacttttattaccttacaattatctacgtaccatattatagaa 3234108  T
Q  115 atatgtgtaagttaacataccttccaatggaatagtcttgccgattgatgtagtcaccgaattttttcacaaaatctttcttcaaatctgcatcactgac 214  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3234107 atatgtataagttaacataccttccaatggaatagtcttgccgattgatgtagtcactgaattttttcacaaaatctttcttcaaatctgcatcactgac 3234008  T
Q  215 ataagatgtaattgtctcaagcaatgctgttgttttggcccatgcaagtctctcttgagacctttcaggctcaaatatgcttgctgctgccaaaaagtag 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  3234007 ataagatgtaattgtctcaagcaatgctgttgttttggcccatgcaagtctctcatgagacctttcaggctcaaatatgtttgctgctgccaaaaagtag 3233908  T
Q  315 gccaata 321  Q
    |||||||    
T  3233907 gccaata 3233901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 138 - 315
Target Start/End: Original strand, 3179356 - 3179533
Alignment:
Q  138 ccaatggaatagtcttgccgattgatgtagtcaccgaattttttcacaaaatctttcttcaaatctgcatcactgacataagatgtaattgtctcaagca 237  Q
    |||||||||| |||| |||| ||||||||||||  | |||| || ||||| ||||||||||||||| |||| || | |||||| |||| ||||| |||||    
T  3179356 ccaatggaatggtctcgccggttgatgtagtcattgtatttgttaacaaagtctttcttcaaatcttcatccctaatataagaagtaaatgtctgaagca 3179455  T
Q  238 atgctgttgttttggcccatgcaagtctctcttgagacctttcaggctcaaatatgcttgctgctgccaaaaagtagg 315  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||    
T  3179456 atgctgtggttttggcccatgcaagtctctcttgagacctttcaggctgaaatatgcttgctgctgctaaaaaatagg 3179533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 173 - 321
Target Start/End: Complemental strand, 3214438 - 3214290
Alignment:
Q  173 gaattttttcacaaaatctttcttcaaatctgcatcactgacataagatgtaattgtctcaagcaatgctgttgttttggcccatgcaagtctctcttga 272  Q
    ||||||||| ||||| ||||||||||||||| |||| |  | ||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||    
T  3214438 gaattttttaacaaagtctttcttcaaatcttcatcccaaatataagatgtaattgttttaagcaatgctgtggttttggcccatgcaagtctctcttga 3214339  T
Q  273 gacctttcaggctcaaatatgcttgctgctgccaaaaagtaggccaata 321  Q
    |||||||||||||||||||| ||| ||||||| ||||| ||||||||||    
T  3214338 gacctttcaggctcaaatatactttctgctgctaaaaaataggccaata 3214290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 37960406 - 37960353
Alignment:
Q  240 gctgttgttttggcccatgcaagtctctcttgagacctttcaggctcaaatatg 293  Q
    ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||    
T  37960406 gctgttgttttagcccatgcaagtctctctagagacctctcaggctcaaatatg 37960353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 11226 - 11297
Alignment:
Q  233 aagcaatgctgttgttttggcccatgcaagtctctcttgagacctttcaggctcaaatatgcttgctgctgc 304  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| || |||||    
T  11226 aagcaaagctgttgtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggcagctgc 11297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 9212 - 9142
Alignment:
Q  234 agcaatgctgttgttttggcccatgcaagtctctcttgagacctttcaggctcaaatatgcttgctgctgc 304  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| || |||||    
T  9212 agcaacgctgttgtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggccgctgc 9142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 28049957 - 28049887
Alignment:
Q  234 agcaatgctgttgttttggcccatgcaagtctctcttgagacctttcaggctcaaatatgcttgctgctgc 304  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| || |||||    
T  28049957 agcaaagctgttgtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggccgctgc 28049887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 12634289 - 12634359
Alignment:
Q  234 agcaatgctgttgttttggcccatgcaagtctctcttgagacctttcaggctcaaatatgcttgctgctgc 304  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||| || |||||||||||||| || |||||    
T  12634289 agcaaagctgttgttttagcccatgcaagtctctctagagacctctcgggctcaaatatgctagccgctgc 12634359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 3364 - 3311
Alignment:
Q  242 tgttgttttggcccatgcaagtctctcttgagacctttcaggctcaaatatgct 295  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||    
T  3364 tgttgtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgct 3311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 11911670 - 11911617
Alignment:
Q  242 tgttgttttggcccatgcaagtctctcttgagacctttcaggctcaaatatgct 295  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||    
T  11911670 tgttgtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgct 11911617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 19851651 - 19851581
Alignment:
Q  234 agcaatgctgttgttttggcccatgcaagtctctcttgagacctttcaggctcaaatatgcttgctgctgc 304  Q
    ||||| ||||||||||| || ||||||| ||||||| ||||||| ||||||||||||||||| || |||||    
T  19851651 agcaaagctgttgtttttgcacatgcaattctctctagagacctctcaggctcaaatatgctggccgctgc 19851581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 293
Target Start/End: Complemental strand, 17231228 - 17231176
Alignment:
Q  241 ctgttgttttggcccatgcaagtctctcttgagacctttcaggctcaaatatg 293  Q
    |||||||||| |||||||||||||||||| ||||||  |||||||||||||||    
T  17231228 ctgttgtttttgcccatgcaagtctctctagagacccctcaggctcaaatatg 17231176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University