View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_low_19 (Length: 328)
Name: NF18521_low_19
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 445951 - 445651
Alignment:
| Q |
11 |
aatgcgacaggtgacaaacaaaatttacctctggttgtgagcatgcaagtacaaactgatttacaatttgtttgaacaaggacttaacagcataaggggg |
110 |
Q |
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| T |
445951 |
aatgcgacaggtgacaaacaaaatttacctctggttgtgagcatgcaagtacaaactgatttacaatttgtttgaacaaggacttaacagcataaggggg |
445852 |
T |
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| Q |
111 |
aacgtacattcaaataaaagcttgattgagctggaatgcactatttgttataatatattgaagaatcaaaatttgaaggaaaatgctatgagttataaaa |
210 |
Q |
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| T |
445851 |
aacgtacattcaaataaaagcttgattgagctggaatgcactatttgttataatatattgaagaatcaaaatttgaaggaaaatgctatgagttataaaa |
445752 |
T |
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| Q |
211 |
attgatctggcaaaaattcacaaacatactctctacctcatcatgacatgcttcaactactgccgcaagcaaatttataacgtcttgttgatgtggctga |
310 |
Q |
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| T |
445751 |
attgatctggcaaaaattcacaaacata--ctctacctcatcatgacatgcttcaactactgccgcaagcaaatttacaacgtcttgttgatgtggctga |
445654 |
T |
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| Q |
311 |
tag |
313 |
Q |
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||| |
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| T |
445653 |
tag |
445651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 464620 - 464689
Alignment:
| Q |
244 |
tacctcatcatgacatgcttcaactactgccgcaagcaaatttataacgtcttgttgatgtggctgatag |
313 |
Q |
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| T |
464620 |
taccttatcatggcaagcttgaaccactgctggaagcaaatttataatgtctggttgatgcggctgatag |
464689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 39113465 - 39113497
Alignment:
| Q |
59 |
gtacaaactgatttacaatttgtttgaacaagg |
91 |
Q |
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| T |
39113465 |
gtacaaattgatttacaatttgtttgaacaagg |
39113497 |
T |
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