View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_low_2 (Length: 608)
Name: NF18521_low_2
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 41894614 - 41895215
Alignment:
| Q |
1 |
aatcagttctcaaatgaagtgtctttgttgctgtgaatatgtagaattttctgtcatctgatttgctctctctaaaagatgagatctgtaaaacaaaagc |
100 |
Q |
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| T |
41894614 |
aatcagttctcaaatgaagtgtctttgttgctgtgaatatgtagaattttctgtcatctgatttgctctctctaaaagatgagatctgtaaaacaaaagc |
41894713 |
T |
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| Q |
101 |
aaggtatatactgagtatatgatttattgacaagaaaaagtttattaatttattactttagagtaaattagtgaaacactgtagcaactataaatgaaaa |
200 |
Q |
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| T |
41894714 |
aaggtatatactgagtatatgatttattgacaagaaaaagtttattaatttattaatttagagtaaattagtgaaacactgtagcaactataaatgaaaa |
41894813 |
T |
|
| Q |
201 |
actggagaagtagaagattattgaacatgtcaccttgttgacaatacatacaacgctatcaataaagtttgaaaatgaagtttaccttatcaaccggata |
300 |
Q |
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| T |
41894814 |
actggagaagtagaagattattgaacatgtcaccttgttgacaatacatacaacgctatcaataaagtttgaaaatgaagtttaccttatcaaccggata |
41894913 |
T |
|
| Q |
301 |
tcatgaaatgactctaccattgtttgactagaatcattcgaatttgattccagtttgaagataatgatgtaaaaatataaatattactggcttcaactaa |
400 |
Q |
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| T |
41894914 |
tcatgaaatgactctaccattgtttgactagaatcattcgaatttgattccagtttgaagataatgatgtaaaaatataaatattactggcttcaactaa |
41895013 |
T |
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| Q |
401 |
agaagaatggnnnnnnnaattttgaccttaaacagtatataagagca-cccatttgaactattttaaagnnnnnnnnctatattgacctggataatatac |
499 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
41895014 |
agaagaatggtttttttaattttgaccttaaacagtatataagagcaccccatttgaattattttaaagaaaaaaaactatattgacctggataatatac |
41895113 |
T |
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| Q |
500 |
cccaccaacaagatggaaagtcccacgtatatatatttctgttgacaaagacaaaagagaagatggccctttccatttccaattccatatactcctatgc |
599 |
Q |
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| T |
41895114 |
cccaccaacaagatggaaagtcccacgtatatatatttctgttgacaaagacaaaagagaagatggccctttccatttccaaatccatatactcctatgc |
41895213 |
T |
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| Q |
600 |
tt |
601 |
Q |
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|| |
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| T |
41895214 |
tt |
41895215 |
T |
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