View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_low_20 (Length: 328)
Name: NF18521_low_20
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 47685893 - 47686191
Alignment:
| Q |
18 |
tgaaggacccgacaaaataaacgcaataggcttttgtagaggagacattaatcaagaggagtgtcgtggttgtttgaaaaaatctgcaacccttctgaca |
117 |
Q |
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| T |
47685893 |
tgaaggacccgacaaaataaacgcaataggcttttgtagaggagacattaatcaagaggagtgtcgcggttgtttgaaaaaatctgcaacccttctgaca |
47685992 |
T |
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| Q |
118 |
gatcgatgtggagaacaaaaagaagcaattggttactatgacttgtgtatcttacgttattcaaatgattcaatttttggtgtcatggaaactaaaacaa |
217 |
Q |
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| T |
47685993 |
gatcgatgtggagaacaaaaagaagcaattggttactatgacttgtgtatcttacgttattcaaatgattcaatttttggtatcatggaaactaaaacaa |
47686092 |
T |
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| Q |
218 |
gtaagtatttcgatatggaaggcaaaacagtagggaatgatgcatttaatcagacacttattgatttgttggatgaacttaaaagtgtggccattgatg |
316 |
Q |
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| T |
47686093 |
gtaagtatttcgatatggaaggcaaaacagtagggaatgatgcatttaatcagacacttattgatttgttggatgaacttaaaagtgtggccattgatg |
47686191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 47673780 - 47674062
Alignment:
| Q |
19 |
gaaggacccgacaaaataaacgcaataggcttttgtagaggagacattaatcaagaggagtgtcgtggttgtttgaaaaaatctgcaacccttctgacag |
118 |
Q |
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|||| ||| |||||| |||| ||||| || |||||||||||||||||||||| |||||| ||||| |||||||||||| ||| || || ||||| | |
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| T |
47673780 |
gaagaacctgacaaagtaaatgcaattggtttttgtagaggagacattaatccagaggaatgtcgcggttgtttgaaatcatcggctacacttctcgtgg |
47673879 |
T |
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| Q |
119 |
atcgatgtggagaacaaaaagaagcaattggttactatgacttgtgtatcttacgttattcaaatgattcaatttttggtgtcatggaaactaaaacaag |
218 |
Q |
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| T |
47673880 |
atcgatgtggaatacaaaaagaagcaattggttacttcgacttgtgtagtttacgttattcaaatgattcaatttttggtgtcatggaaactaaaacaag |
47673979 |
T |
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| Q |
219 |
taagtatttcgatatggaaggcaaaacagtagggaatgatgcatttaatcagacacttattgatttgttggatgaacttaaaa |
301 |
Q |
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| T |
47673980 |
taattatttcaatatcaaagctaatacaagggcggatgatgcatttaatcaaacacttcttgatttgttggatgaacttaaaa |
47674062 |
T |
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