View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_low_22 (Length: 317)
Name: NF18521_low_22
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 10295705 - 10295412
Alignment:
| Q |
9 |
agcagcacagacaaaaagacacacgtacaacgcggaatcaggaatgaaaacatggctgttttctagtgagggaaaagtttaaaagatagaaaataaaaca |
108 |
Q |
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| T |
10295705 |
agcagcacatacaaaaagacacacgtacaacgcggaatcaggaatgaaaacatggctgttttctagtgagggaaaagtttaaaagatagaaaataaaaca |
10295606 |
T |
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| Q |
109 |
gttttatcaacaacactatgttatgtctcaagcatctcatgagttaatcaattgacagtaacgtggaagcagcgatgttgtagtgtgtgattttcttacc |
208 |
Q |
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| T |
10295605 |
gttttatcaacaacactatattatgtctcaagcatctcatgagttaatcaattgacagtaacgtggaagcagcgatgttgtagtgtgtgattttcttacc |
10295506 |
T |
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| Q |
209 |
agatgtaagctgttttctgcaacaagtaatattccttgcggacactcaatagtgcaaacaggagttaaatgtgacgaagattgaacattgatag |
302 |
Q |
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| T |
10295505 |
agatgtaagctgttttctgcaacaagtaatattccttgcggacactcactagtgcaaataggagttaaatgtgacgaagattgaacattgatag |
10295412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 43797651 - 43797729
Alignment:
| Q |
196 |
tgattttcttaccagatgtaagctgttttctgcaacaagtaatattccttgcggacactcaatagtgcaaacaggagtt |
274 |
Q |
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|||||||||||||||||| || |||||||| ||||||| ||||||||||| ||||| ||||||| ||||||||||||| |
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| T |
43797651 |
tgattttcttaccagatgcaaactgttttcagcaacaaataatattccttttggacagtcaatagagcaaacaggagtt |
43797729 |
T |
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