View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_low_25 (Length: 289)
Name: NF18521_low_25
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 13212636 - 13212894
Alignment:
| Q |
20 |
attttctctcatctgcaactatgatctatgctcaacacctcacattgaatcttccagaaccatcaatcgatctattgtatctcggaatagcgctgtttct |
119 |
Q |
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| T |
13212636 |
attttctctcatctgcaactctgatctatgctcaacacctcacatcgaatcttccagaaccatcaattgatctattgtatcctggaatcgcgctgtttct |
13212735 |
T |
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| Q |
120 |
tgtaggcgtcaccggcaacttctaccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgtttgat |
219 |
Q |
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| T |
13212736 |
tgtaggcgtcaccggaaacttctaccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgtttgat |
13212835 |
T |
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| Q |
220 |
tttgtgatatgtcctcattatcttttcgagatcatagggttttatggattttccttcat |
278 |
Q |
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| T |
13212836 |
tttgtgatatgtcctcattatcttttcgagatcatagggttttatggattttccttcat |
13212894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 13165929 - 13166036
Alignment:
| Q |
133 |
ggcaacttctaccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgtttgattttgtgatatgtc |
232 |
Q |
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| T |
13165929 |
ggcaacttctaccatcattttcttctatcaaaattgagaggaaaaggtgaaaaagaatacaagattcctaaaggtggcttatttgggattgtgatatgtc |
13166028 |
T |
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| Q |
233 |
ctcattat |
240 |
Q |
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| T |
13166029 |
ctcattat |
13166036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 13188813 - 13188911
Alignment:
| Q |
142 |
taccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgtttgattttgtgatatgtcctcattat |
240 |
Q |
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| T |
13188813 |
taccatcattttcttctatcaaaattgagaggaaaaggtgaaaaagaatacaagattcctaaaggtggcttatttgggattgtgatatgtcctcattat |
13188911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 13188707 - 13188811
Alignment:
| Q |
133 |
ggcaacttctaccatcattatcttctatccaaattaagaggaaaaggtgaaaaggaatacaagattcctaaaggtggcttgtttgattttgtgatatgtc |
232 |
Q |
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| T |
13188707 |
ggcaatttataccatcattttcttctatcaaaattgagaggaaaaggtgaaaaagaatacaagattcctaaaggtggcttatttgggattgtgatatgtc |
13188806 |
T |
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| Q |
233 |
ctcat |
237 |
Q |
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||||| |
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| T |
13188807 |
ctcat |
13188811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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