View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_low_27 (Length: 280)
Name: NF18521_low_27
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_low_27 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 6 - 280
Target Start/End: Original strand, 10310669 - 10310943
Alignment:
| Q |
6 |
gtgagatgaaattggtaaaatattcagctcgtcatccataaacacacaagccttgcaagaagcgagtgataataagaagcgttcattaaagcgtccggtg |
105 |
Q |
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| T |
10310669 |
gtgagatgaaattggtaaaatattcagctcgtcatccatgaacacacaagccttgcaagaagcaagtgataataagaagcgttcattaaagcgtccggtg |
10310768 |
T |
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| Q |
106 |
gcatccatgtgtgattcagttcgaaatctttcatggacatcctgcgatcaaaggagagtgtgaaaattaaactgaacgaaacttttaacaaaagagtacc |
205 |
Q |
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| T |
10310769 |
gcatccatgtgtgattcagttcgaaatctttcatggacatcctgcgatcaaaggagaatgtgaaaattaaactgaacgaaacttttaacaaaagagtacc |
10310868 |
T |
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| Q |
206 |
gtggtagacattggccttataggctacttcaccacgttcataagatgtcttgaaaaatatgaatgccgttgaatc |
280 |
Q |
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| T |
10310869 |
gtggtagacattggccttataggctacttcaccacattcataagatgtcttgaaaaatatgaatgcccttgaatc |
10310943 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 38434802 - 38434946
Alignment:
| Q |
6 |
gtgagatgaaattggtaaaatattcagctcgtcatccataaacacacaagccttgcaagaagcgagtgataataagaagcgttcattaaagcgtccggtg |
105 |
Q |
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|||||||||||||||||| | ||||||||| || ||||| | ||| || ||||| || || || | ||||| ||| ||||||||||||||||| || || |
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| T |
38434802 |
gtgagatgaaattggtaatacattcagctcatcgtccatgaccacgcatgccttacaggaggcaattgatagtaaaaagcgttcattaaagcgcccagta |
38434901 |
T |
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| Q |
106 |
gcatccatgtgtgattcagttcgaaatctttcatggacatcctgc |
150 |
Q |
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| T |
38434902 |
gcttgagagtgggattcagttcgaaatctgtcgtggacatcctgc |
38434946 |
T |
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