View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_low_29 (Length: 267)
Name: NF18521_low_29
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 31792081 - 31792331
Alignment:
| Q |
13 |
aaaatccctcccgtacggtttgaaatctgccttcactattgttgaaagatagttgttgttgccagtatccaagatcgaatcaccaaatgctataacagca |
112 |
Q |
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| T |
31792081 |
aaaatccctcccgtacggtttgaaatctgccttcactattgttgaaagatagttgttgttgccagtatccaagatcgaatcaccaaatgctataacagca |
31792180 |
T |
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| Q |
113 |
ggaaatgaatggtttttataaggaggttcatcaaatgtagctgtcacatcaaatggataaaacaaaaccagaaaaggacagacataaaaagatttaataa |
212 |
Q |
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| T |
31792181 |
ggaaatgaatggtttttataaggaggttcatcaaatgtagctgtcacatcaaatggataaaacaaaaccagaaaaggacagacataaaaatatttaataa |
31792280 |
T |
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| Q |
213 |
gagtgaaaagcttcatcatgtgatttgaattgaatctcactcttttgattc |
263 |
Q |
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| T |
31792281 |
gagtgaaaagcttcatcatgtgatttgaattgaatctcactcttttgattc |
31792331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 31787527 - 31787781
Alignment:
| Q |
13 |
aaaatccctcccgtacggtttgaaatctgccttcactattgttgaaagatagttgttgttgccagtatccaagatcgaatcaccaaatgctataacagca |
112 |
Q |
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|||||||||||| | ||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
31787527 |
aaaatccctcccattcggtttgaaattcgccttcactattgttgaaatataattgttgttgccagtatccaagattgaatcaccaaatgccataacagca |
31787626 |
T |
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| Q |
113 |
ggaaatgaatggtttttataaggaggttcatcaaatgtagctgtcacatcaaatggataaaacaaaaccagaaaaggacagacataaaaagatttaataa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
31787627 |
ggaaatgaatggtttttataaggaggttcatcaaatgtagctgtcacaacaaatggataaaacaaaactagaaaaggacaggcataaaaagatttaataa |
31787726 |
T |
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| Q |
213 |
gagtgaaaagcttcatcatgtgatttgaattgaatctcactcttttgattcaacc |
267 |
Q |
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| T |
31787727 |
gggtgaaaagcttcatcatgtgatttgaattgaatctcactcttttgattcaacc |
31787781 |
T |
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