View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_low_31 (Length: 247)
Name: NF18521_low_31
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 31792387 - 31792567
Alignment:
| Q |
11 |
aattggaaatatgtaacactttacctgttggtaacagctacttaactgtcatgacatgacaaaggtgctagctatttcttgttagtcaagggaaaattaa |
110 |
Q |
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| T |
31792387 |
aattggaaatatgtaacactttacctgttggtaacagctacttaactgtcatg-----acaaaggtgctagctatttcttgttagccaagggaaaattaa |
31792481 |
T |
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| Q |
111 |
agggcacagtttacaattttctgaactctacttcattgggtgtgttgatccaattctttgtcatagcaataccaacattaaacttt |
196 |
Q |
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| T |
31792482 |
agggcacagtttacaattttctgaactctacttcattgggtgtgttgatccaattctttgtcatagcaataccaacattaaacttt |
31792567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 157
Target Start/End: Original strand, 31787848 - 31787981
Alignment:
| Q |
23 |
gtaacactttacctgttggtaacagcta----cttaactgtcatgacatgacaaaggtgctagctatttcttgttagtcaagggaaaattaaagggcaca |
118 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||| ||||||| ||| ||||||||| |
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| T |
31787848 |
gtaacactttacctgttggtatcagctagctacttaactgtcatggta-----aaggtgctagctatttcttgttagctaagggaagattcaagggcaca |
31787942 |
T |
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| Q |
119 |
gtttacaattttctgaactctacttcattgggtgtgttg |
157 |
Q |
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| T |
31787943 |
gttttcaattttctgaactctacttcattgggtgtgttg |
31787981 |
T |
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