View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18521_low_33 (Length: 240)

Name: NF18521_low_33
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18521_low_33
NF18521_low_33
[»] chr1 (3 HSPs)
chr1 (1-224)||(46481681-46481904)
chr1 (20-222)||(18285461-18285664)
chr1 (20-217)||(1190698-1190896)
[»] chr2 (2 HSPs)
chr2 (24-223)||(4259482-4259681)
chr2 (2-222)||(14128146-14128364)
[»] chr6 (2 HSPs)
chr6 (20-222)||(18506508-18506710)
chr6 (105-222)||(31826963-31827080)
[»] chr3 (2 HSPs)
chr3 (1-214)||(28727961-28728172)
chr3 (3-224)||(35544332-35544550)
[»] chr5 (1 HSPs)
chr5 (26-222)||(34152213-34152409)
[»] chr8 (2 HSPs)
chr8 (148-224)||(4780694-4780770)
chr8 (1-53)||(4780828-4780878)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 46481681 - 46481904
Alignment:
Q  1 cggtcaaaagtgcttaataaatcacttgactagttcggatgtggcaatcgatgcccgatgtagtcatatcttatggctcaagcaaattcggcttgaggtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46481681 cggtcaaaagtgcttaataaatcacttgactagttcggatgtggcaatcgatgcccgatgtagtcatatcttatggctcaagcaaattcggcttgaggtc 46481780  T
Q  101 aatatttttatttggcatttgttctataataaattagtgactaggacgaatctgtttaggagaaatatcatggattataatgaatctttttattcgggca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  46481781 aatatttttatttggcatttgttctataataaattagtgactaggacgaatctgtttaggagaaatatcatggattataatgaatctttttattcaagca 46481880  T
Q  201 cttgcggattggttgaggatcaag 224  Q
    ||||||||||||||||||||||||    
T  46481881 cttgcggattggttgaggatcaag 46481904  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 18285461 - 18285664
Alignment:
Q  20 aatcacttgactagttcggatgtggcaatcgatgc-ccgatgtagtcatatcttatggctcaagcaaattcggcttgaggtcaatatttttatttggcat 118  Q
    |||||||||||||| ||||| |||||||| |||   ||| |||| |||| | |||||||| |||||||||| |||| |||| |||| ||||||||| | |    
T  18285461 aatcacttgactagatcggacgtggcaattgatataccgttgtaatcatgttttatggcttaagcaaattccgcttaaggttaataattttatttgtcgt 18285560  T
Q  119 ttgttctataataaattagtgactaggacgaatctgtttaggagaaatatcatggattataatgaatctttttattcgggcacttgcggattggttgagg 218  Q
    |||||    |||| |||||  || | || |||| ||||||||||||||||  ||||||||||||| ||||||| ||||| |  |||||||||||| ||||    
T  18285561 ttgtttctgaatagattagcaacaaagatgaatatgtttaggagaaatatattggattataatgattctttttgttcggccgtttgcggattggtagagg 18285660  T
Q  219 atca 222  Q
    ||||    
T  18285661 atca 18285664  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 217
Target Start/End: Original strand, 1190698 - 1190896
Alignment:
Q  20 aatcacttgactagttcggatgtggcaatcgatgcccgatgtagtcatatct-tatggctcaagcaaattcggcttgaggtcaatatttttatttggcat 118  Q
    ||||||||||||||||| ||||||||||| |||| ||| || | |||| | | ||||||| |||||||||  |||| |||| ||||||| |||||| | |    
T  1190698 aatcacttgactagttcagatgtggcaattgatgaccgttgcaatcatgtttatatggcttaagcaaatttcgcttaaggttaatatttgtatttgacgt 1190797  T
Q  119 ttgttctataataaattagtgactaggacgaatctgtttaggagaaatatcatggattataatgaatctttttattcgggcacttgcggattggttgag 217  Q
    ||||||   |||| ||||   | ||  | |||||| |||||||||||||||||| |||||||||| ||||||| ||| | | ||| |||||||||||||    
T  1190798 ttgttcctaaatagattaacaattaaaatgaatctatttaggagaaatatcatgaattataatgattctttttgttcagccgcttacggattggttgag 1190896  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 4259681 - 4259482
Alignment:
Q  24 acttgactagttcggatgtggcaatcgatgcccgatgtagtcatatcttatggctcaagcaaattcggcttgaggtcaatatttttatttggcatttgtt 123  Q
    |||||||| | |||||||||||||| |||| ||| || | |||| | |||||||| |||||||||| |  | |||| |||||||||||||||||||||||    
T  4259681 acttgacttgatcggatgtggcaattgatgaccgttgcaatcatgttttatggcttaagcaaattctgtgtaaggttaatatttttatttggcatttgtt 4259582  T
Q  124 ctataataaattagtgactaggacgaatctgtttaggagaaatatcatggattataatgaatctttttattcgggcacttgcggattggttgaggatcaa 223  Q
    |   |||| |||||  || |  | |||| ||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||    
T  4259581 cctgaatagattagcaacaaaaatgaatatgtttaggagaaatatcttggattataatgattctttttgttcggccacttgcggattggtagaggatcaa 4259482  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 14128364 - 14128146
Alignment:
Q  2 ggtcaaaagtgcttaataaatcacttgactagttcggatgtggcaatcgatgcccgatgtagtcatatcttatggctcaagcaaattcggcttgaggtca 101  Q
    ||||||||||||||| |||| || |||| ||||| |||||||  | | |||| ||| || | |||| | |||||||| |||||||||| ||||  | |||    
T  14128364 ggtcaaaagtgctta-taaa-catttgattagtttggatgtgatagttgatgaccgctgcaatcatgttttatggcttaagcaaattccgcttacgatca 14128267  T
Q  102 atatttttatttggcatttgttctataataaattagtgactaggacgaatctgtttaggagaaatatcatggattataatgaatctttttattcgggcac 201  Q
    ||||||||||||||  ||||||| | ||||||||||  |||| || |||||| ||||||||||||||| ||||||||||||| ||||||| || || | |    
T  14128266 atatttttatttggtgtttgttccagaataaattagcaactaagatgaatctctttaggagaaatatcttggattataatgattctttttgtttggccgc 14128167  T
Q  202 ttgcggattggttgaggatca 222  Q
    |||||||| ||||||| ||||    
T  14128166 ttgcggataggttgagaatca 14128146  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 18506710 - 18506508
Alignment:
Q  20 aatcacttgactagttcggatgtggcaatcgatgcccgatgtagtcatatcttatggctcaagcaaattcggcttgaggtcaatatttttatttggcatt 119  Q
    |||||||||||||  || ||||||||||| |||| ||  |||| |||||| |||||||| |||||||||  |||| |||| |||||||||||||||||||    
T  18506710 aatcacttgactatatccgatgtggcaattgatgaccactgtaatcatattttatggcttaagcaaatttcgcttaaggttaatatttttatttggcatt 18506611  T
Q  120 tgttctataataaattagtgactaggacgaatctgtttaggagaaatatcatggattataatgaatctttttattcgggcacttgcggattggttgagga 219  Q
    ||||| | |||| |||||  |||  ||  ||||| ||||||||||||||| | ||||||||||| ||||||| || || | ||||||||||| |||||||    
T  18506610 tgttccaaaatagattagcaactgcgattaatctatttaggagaaatatcttagattataatgactctttttgtttggccgcttgcggattgattgagga 18506511  T
Q  220 tca 222  Q
    |||    
T  18506510 tca 18506508  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 222
Target Start/End: Complemental strand, 31827080 - 31826963
Alignment:
Q  105 tttttatttggcatttgttctataataaattagtgactaggacgaatctgtttaggagaaatatcatggattataatgaatctttttattcgggcacttg 204  Q
    ||||| |||||||||||||| | |||| |||||  |||| || |||| ||||||||||||||||  ||||||||||||||||||||| ||||| | ||||    
T  31827080 tttttgtttggcatttgttccagaatagattagcaactaagatgaatatgtttaggagaaatattttggattataatgaatctttttgttcggccgcttg 31826981  T
Q  205 cggattggttgaggatca 222  Q
    |||||||||||| |||||    
T  31826980 cggattggttgaagatca 31826963  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 28727961 - 28728172
Alignment:
Q  1 cggtcaaaagtgcttaataaatcacttgactagttcggatgtggcaatcgatgcccgatgtagtcatatcttatggctcaagcaaattcggcttgaggtc 100  Q
    |||||||||||||||  | ||||||||||||||||||||||||| ||| |||| ||| |  | |||||| |||||||| ||| |||||| |||| |||||    
T  28727961 cggtcaaaagtgctt--ttaatcacttgactagttcggatgtgggaattgatgaccgctacaatcatattttatggcttaagtaaattctgcttaaggtc 28728058  T
Q  101 aatatttttatttggcatttgttctataataaattagtgactaggacgaatctgtttaggagaaatatcatggattataatgaatctttttattcgggca 200  Q
    |||||||||||||||| |||||| |  |||| |||||  |||| ||  ||||||||| ||||||||||| || ||||||| || ||||||| ||||| |     
T  28728059 aatatttttatttggcgtttgtttttgaatagattagcaactaagataaatctgttttggagaaatatcttgaattataacgattctttttgttcggcct 28728158  T
Q  201 cttgcggattggtt 214  Q
    |||||  |||||||    
T  28728159 cttgcatattggtt 28728172  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 35544332 - 35544550
Alignment:
Q  3 gtcaaaagtgcttaataaatcacttgactagttcggatgtggcaatcgatgcccgatgtagtcatatcttatggctcaagcaaattcggcttgaggtcaa 102  Q
    ||||||||||||||   |||| |||||| ||||||||||||||||| |||| ||| || | |||| | |||||||| |||||||||| |||| |||| ||    
T  35544332 gtcaaaagtgcttat--aatcgcttgaccagttcggatgtggcaattgatgaccgttgcaatcatgttttatggcttaagcaaattccgcttaaggtaaa 35544429  T
Q  103 tatttttatttggcatttgttctataataaattagtgactaggacgaatctgtttaggagaaatatcatggattataatgaatctttttattcgggcact 202  Q
    ||||||| |||| | |||||||   |||| |||||  ||||  | | ||| |||||||||||||||| ||||||||||| | ||||||| |||||   ||    
T  35544430 tatttttttttgacgtttgttcctgaatagattagcaactacaaag-atcggtttaggagaaatatcttggattataattattctttttgttcggtggct 35544528  T
Q  203 tgcggattggttgaggatcaag 224  Q
    ||| |||||||||| |||||||    
T  35544529 tgcagattggttgatgatcaag 35544550  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 34152409 - 34152213
Alignment:
Q  26 ttgactagttcggatgtggcaatcgatgcccgatgtagtcatatcttatggctcaagcaaattcggcttgaggtcaatatttttatttggcatttgttct 125  Q
    |||||||| || ||||||| ||| |||| | | || | |||| | |||||||| ||| |||||| |||| ||||||||||||||||||||  |||||||     
T  34152409 ttgactagctcagatgtggaaattgatgactgttgcaatcatgttttatggcttaagaaaattccgcttaaggtcaatatttttatttggtgtttgttcc 34152310  T
Q  126 ataataaattagtgactaggacgaatctgtttaggagaaatatcatggattataatgaatctttttattcgggcacttgcggattggttgaggatca 222  Q
      |||| |||||  || | || |||||||||||||||||||||| ||||||||||||| ||||||| || || | ||||||||||||| ||||||||    
T  34152309 tgaatagattagcaacaaagatgaatctgtttaggagaaatatcttggattataatgattctttttgtttggacgcttgcggattggtggaggatca 34152213  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 4780770 - 4780694
Alignment:
Q  148 gaatctgtttaggagaaatatcatggattataatgaatctttttattcgggcacttgcggattggttgaggatcaag 224  Q
    ||||||||||| ||||||| || ||||||||||||| ||||||| ||||  | ||||||||||||||||||||||||    
T  4780770 gaatctgtttaagagaaatgtcttggattataatgattctttttgttcgaccgcttgcggattggttgaggatcaag 4780694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4780878 - 4780828
Alignment:
Q  1 cggtcaaaagtgcttaataaatcacttgactagttcggatgtggcaatcgatg 53  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||| ||||    
T  4780878 cggtcaaaagtgcttat--aatcacttgactagttcggatgtggcaattgatg 4780828  T

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