View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_low_38 (Length: 236)
Name: NF18521_low_38
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 35619353 - 35619144
Alignment:
| Q |
10 |
ttgacaccatatgaggaatctaaaatacgaaggaatgtaagagaggggaaaagaagaacagaagcaagatccattctcattgcatgaaaaacaaaatgtt |
109 |
Q |
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| T |
35619353 |
ttgacaccatatgaggaatctaaaatacgaaggaatgtaagagaggggaaaagaagaacagaagcaagatccattctcattgcatgaaaaacaaaatgtt |
35619254 |
T |
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| Q |
110 |
cagcaaggaagtgtataatatactgatacagaaaatggataatggataagtctgttgctatatctaaccgactctaacagtttgtttataagcccactga |
209 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35619253 |
cagcaaggaagtat---atatactgatacagaaaatggataatggataagtctgttgctatatctaaccgactctaacagtttgtttataagcccactga |
35619157 |
T |
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| Q |
210 |
actaactctaacc |
222 |
Q |
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||||||||||||| |
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| T |
35619156 |
actaactctaacc |
35619144 |
T |
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