View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18521_low_40 (Length: 225)

Name: NF18521_low_40
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18521_low_40
NF18521_low_40
[»] chr7 (9 HSPs)
chr7 (37-208)||(29279160-29279331)
chr7 (37-208)||(29269760-29269931)
chr7 (37-210)||(29287593-29287766)
chr7 (37-147)||(29275327-29275437)
chr7 (81-210)||(28612912-28613041)
chr7 (73-210)||(28621251-28621388)
chr7 (73-204)||(28614653-28614783)
chr7 (37-191)||(29282139-29282293)
chr7 (50-114)||(29286976-29287040)
[»] chr1 (3 HSPs)
chr1 (51-186)||(4235404-4235539)
chr1 (51-186)||(49144997-49145132)
chr1 (49-172)||(49149542-49149665)
[»] chr5 (1 HSPs)
chr5 (87-180)||(35625842-35625935)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 37 - 208
Target Start/End: Original strand, 29279160 - 29279331
Alignment:
Q  37 aatgaggaaggtagattgggcaaatttagaagcctatcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtg 136  Q
    |||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29279160 aatgaggaaggttgattgggaaaatttagaagcatatcctcttagttttgttcttgataagttggaagaacacatagatcatgttaggtttggtgtggtg 29279259  T
Q  137 tgcaagacttggctttcagttgcaaagcttaaccataaaaatcatcaatttaggattaatgtaccacctatg 208  Q
    || |||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29279260 tgtaagaattggttttcagttgcaacgcttaaccataaaaatcatcaatttaggattaatgtaccacctatg 29279331  T

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Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 37 - 208
Target Start/End: Original strand, 29269760 - 29269931
Alignment:
Q  37 aatgaggaaggtagattgggcaaatttagaagcctatcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtg 136  Q
    |||||| |||||||||||| ||||||||||   ||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||    
T  29269760 aatgagaaaggtagattggtcaaatttagattgctaccctcttagtttggttcttgacgagttggaagaacacatagatcatgttaggtttggtgtggtg 29269859  T
Q  137 tgcaagacttggctttcagttgcaaagcttaaccataaaaatcatcaatttaggattaatgtaccacctatg 208  Q
    ||||||| ||| || ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29269860 tgcaagagttgcctatcaattgcaaagcttaaccataaaaatcatcaatttaggattgatgtaccacctatg 29269931  T

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Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 37 - 210
Target Start/End: Original strand, 29287593 - 29287766
Alignment:
Q  37 aatgaggaaggtagattgggcaaatttagaagcctatcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtg 136  Q
    ||||| ||| ||||||||||||||||||| ||    ||||||||||||||||||||| |||||||||| ||| | |||  ||||||||||| ||||||||    
T  29287593 aatgacgaatgtagattgggcaaatttaggaggacttcctcttagtttggttcttgaaaagttggaagtacaaacagactatgttaggtttggtgtggtg 29287692  T
Q  137 tgcaagacttggctttcagttgcaaagcttaaccataaaaatcatcaatttaggattaatgtaccacctatgct 210  Q
    || |||| |||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29287693 tgtaagaattggctatcaattgctaagcttaaccataaaaatcatcaatttaggattaatgtactacctatgct 29287766  T

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Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 37 - 147
Target Start/End: Original strand, 29275327 - 29275437
Alignment:
Q  37 aatgaggaaggtagattgggcaaatttagaagcctatcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtg 136  Q
    |||||||||||| ||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  29275327 aatgaggaaggttgattgggaaaatttagaatcctctcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtagtg 29275426  T
Q  137 tgcaagacttg 147  Q
    |||||||||||    
T  29275427 tgcaagacttg 29275437  T

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Target: chr7; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 28613041 - 28612912
Alignment:
Q  81 gtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtgtgcaagacttggctttcagttgcaaagcttaaccataaaaatca 180  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||||||||| ||||||||||||||||||||| |||  ||    
T  28613041 gtttggttcttgacaagttggaagaacacatagatcatgttaggtttgctgtcgtgtgcaagacttggctatcagttgcaaagcttaaccatcaaagcca 28612942  T
Q  181 tcaatttaggattaatgtaccacctatgct 210  Q
    ||||||||||| |||| ||||||| |||||    
T  28612941 tcaatttaggagtaatataccacccatgct 28612912  T

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Target: chr7; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 73 - 210
Target Start/End: Original strand, 28621251 - 28621388
Alignment:
Q  73 tcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtgtgcaagacttggctttcagttgcaaagcttaaccat 172  Q
    ||||||||||||||||||||| || |||||||||||||| ||||||||||||||| |||| |||||||| | ||||| ||||||||||||| | ||||||    
T  28621251 tcctcttagtttggttcttgacaaattggaagaacacatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaaccat 28621350  T
Q  173 aaaaatcatcaatttaggattaatgtaccacctatgct 210  Q
     |||||||||||||||| |||||| ||||||| |||||    
T  28621351 caaaatcatcaatttagcattaatataccacccatgct 28621388  T

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Target: chr7; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 204
Target Start/End: Original strand, 28614653 - 28614783
Alignment:
Q  73 tcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtgtgcaagacttggctttcagttgcaaagcttaaccat 172  Q
    |||||||| |||||||||||  ||||| ||||||||||||||||||||||||||  |||| ||||||||||||||||  |||||||||||||||||||||    
T  28614653 tcctcttaatttggttcttgc-aagttagaagaacacatagatcatgttaggttcagtgtcgtgtgcaagacttggcgatcagttgcaaagcttaaccat 28614751  T
Q  173 aaaaatcatcaatttaggattaatgtaccacc 204  Q
     |||| |||||||||| ||||| | |||||||    
T  28614752 caaaaccatcaatttatgattactataccacc 28614783  T

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Target: chr7; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 29282139 - 29282293
Alignment:
Q  37 aatgaggaaggtagattgggcaaatttagaagcctatcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtg 136  Q
    |||||||||||| ||||||||||||||| | |    ||||||||||||||||||||| |||||||||| ||| | |||  ||||||||||  |||| |||    
T  29282139 aatgaggaaggttgattgggcaaatttaaatgaacttcctcttagtttggttcttgaaaagttggaagtacaaacagactatgttaggttcggtgttgtg 29282238  T
Q  137 tgcaagacttggctttcagttgcaaagcttaaccataaaaatcatcaatttagga 191  Q
    || |||| |||||| |||| ||| |||||||||||||||||||||||||||||||    
T  29282239 tgtaagaattggctatcagctgctaagcttaaccataaaaatcatcaatttagga 29282293  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 29286976 - 29287040
Alignment:
Q  50 gattgggcaaatttagaagcctatcctcttagtttggttcttgataagttggaagaacacataga 114  Q
    ||||||||||||||||||  ||| ||||| |||||||| ||||| ||||||||||||||||||||    
T  29286976 gattgggcaaatttagaatgctaccctctcagtttggtgcttgacaagttggaagaacacataga 29287040  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 4235404 - 4235539
Alignment:
Q  51 attgggcaaatttagaagcctatcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtgtgcaagacttggct 150  Q
    |||||||||||||||||||   ||||||||||||| | ||||| ||||| |||||||||||| |||||||| ||||| |||  |||||||||| |||||     
T  4235404 attgggcaaatttagaagcacttcctcttagtttgatacttgacaagttagaagaacacatatatcatgtttggtttggtgctgtgtgcaagagttggcg 4235503  T
Q  151 ttcagttgcaaagcttaaccataaaaatcatcaatt 186  Q
     ||| |||||||| |||||||| |||||||||||||    
T  4235504 atcaattgcaaagtttaaccatcaaaatcatcaatt 4235539  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 49144997 - 49145132
Alignment:
Q  51 attgggcaaatttagaagcctatcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtgtgcaagacttggct 150  Q
    ||||||||||||||||||||  | |||||| |||| ||||||| ||||| ||||||||||||||| |||||  |||| |||  ||||||||||||||||     
T  49144997 attgggcaaatttagaagcccttgctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcg 49145096  T
Q  151 ttcagttgcaaagcttaaccataaaaatcatcaatt 186  Q
     ||| |||||||| ||| |||| |||||||||||||    
T  49145097 atcaattgcaaagtttagccatcaaaatcatcaatt 49145132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 49149542 - 49149665
Alignment:
Q  49 agattgggcaaatttagaagcctatcctcttagtttggttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtgtgcaagacttgg 148  Q
    |||||||| |||||||| |||   ||||||| ||||||||||||| | ||| ||||||||||||||||||||| ||||| |||  |||||||||| ||||    
T  49149542 agattgggtaaatttaggagcaattcctcttggtttggttcttgacatgttagaagaacacatagatcatgtttggtttggtgctgtgtgcaagagttgg 49149641  T
Q  149 ctttcagttgcaaagcttaaccat 172  Q
    |  ||| |||||||||||||||||    
T  49149642 cgatcaattgcaaagcttaaccat 49149665  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 35625935 - 35625842
Alignment:
Q  87 ttcttgataagttggaagaacacatagatcatgttaggtttcgtgtggtgtgcaagacttggctttcagttgcaaagcttaaccataaaaatca 180  Q
    ||||||| ||||| |||||||  |||||||||||| ||||  |||  ||||||||||  ||||  ||| |||||||| |||||||| |||||||    
T  35625935 ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatca 35625842  T

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