View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_low_5 (Length: 531)
Name: NF18521_low_5
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 3 - 513
Target Start/End: Original strand, 10310937 - 10311438
Alignment:
| Q |
3 |
ttgaatctgcttccttaccatcaccattgtgtacaaacatgtaagcgatgatagagtgcgaataagcaaaacaacgagacctcctccctcaaccgtctct |
102 |
Q |
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| T |
10310937 |
ttgaatctgcttccttaccatcaccattgtgtacaaacatgtaagagatgatagagtacgaataagcaaaacaacgagacctcctccctcaaccgtctct |
10311036 |
T |
|
| Q |
103 |
attgtccgtgcttggagattaggcgttaacgcctcgaaatccttaaagaaaaaaacagttacaaaatcggttcatcttggnnnnnnnnnnnnnnnnggaa |
202 |
Q |
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| T |
10311037 |
attgttcgtgctaggagattaggcgttaacgcctcgaaatccttaaagaaaaaaacagttacaaaattggttcatcttggaaaaaaa---------ggaa |
10311127 |
T |
|
| Q |
203 |
agagaaagacaacttagacaagaaaaagtaattaagctagtaagaaatgtaagatacctgaagtatacacattccaaaagtactacccagaattttttca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10311128 |
agagaaagacaacttagacaagaaaaagtaattaagctagtaagaagtgtaagatacctgaagtatacacattccaaaagtactacccagaattttttca |
10311227 |
T |
|
| Q |
303 |
gaatcctcatacaaacgacgagttatttctttacttttcataaacgatgaaaatggatcagctctatcggggtccaaaagacccctcttcctcaattttt |
402 |
Q |
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| T |
10311228 |
gaatcctcatacaaacgacgagttatttctttacttttcataaacgacgaaaatggatcagctctatcggggtccaaaagacccctcttcctcaattttt |
10311327 |
T |
|
| Q |
403 |
caatctgcttctcatgttccttcatatgactgcattcaaaatcatattaaacaagttcatgtaaacactcatccctcaaacaaatcaatacatcaataaa |
502 |
Q |
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| T |
10311328 |
caatctgcttctcatgtttcttcatatgactgcattcaaaatcatatcaaacaagttcatgtaaacactcatccctcaaacaaatcaatacatcaataaa |
10311427 |
T |
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| Q |
503 |
tcacgacagat |
513 |
Q |
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| T |
10311428 |
tcacgacagat |
10311438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 38435341 - 38435482
Alignment:
| Q |
4 |
tgaatctgcttccttaccatcaccattgtgtacaaacatgtaagcgatgatagagtgcgaataagcaaaacaacgagacctcctccctcaaccgtctcta |
103 |
Q |
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||||||| ||| | |||||||||||| |||||||||| || ||||| ||||||| ||| | ||||||||||| | |||||||| || || ||||||| |
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| T |
38435341 |
tgaatcttcttacgtaccatcaccatcgtgtacaaactggttagcgaagatagagagcgcaaaagcaaaacaatcaaccctcctccttccactgtctcta |
38435440 |
T |
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| Q |
104 |
ttgtccgtgcttggagattaggcgttaacgcctcgaaatcct |
145 |
Q |
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| || | |||| | |||||||| ||||||||||| ||||||| |
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| T |
38435441 |
tagttcttgctagtagattaggtgttaacgcctcaaaatcct |
38435482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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