View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18521_low_9 (Length: 454)
Name: NF18521_low_9
Description: NF18521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18521_low_9 |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 11 - 438
Target Start/End: Original strand, 14731101 - 14731528
Alignment:
| Q |
11 |
aagcatataacaactgttcttagaactaacaaatattttttaatcctctataatacataacaaaggaggaaacataagattaaataagtagcagaaagtc |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14731101 |
aagcatataacaaatgttcttagaactaacaaatattttttaatcctctataatacataacaaaggaggaaacataagattaaataagtagcagaaagtc |
14731200 |
T |
|
| Q |
111 |
attgaagacaaaagattacactctacagtctacaccactgagacagatagcaaaaattgtcatttcacaacctgtcctccaaggagatcttcaatgcttc |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14731201 |
attgaagacaaaagattacactctacagtctacaccactgagacagatagcaaaaattgtcatttcacaacctgtcctccaaggagatcttcaatgcttc |
14731300 |
T |
|
| Q |
211 |
aagtttttcaaagtgtctctgagattaagaagttgtatttttcatgttttagaattcacaaaactcatcgattaagaaagagaaataacaataaggagag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14731301 |
aagtttttcaaagtgtctctgagattaagaagttgtatttttcatgttttagaattcacaaaactcatcgattaagaaagagaaataacaataaggagag |
14731400 |
T |
|
| Q |
311 |
gatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttgcatcctgaaaacaacagtgaaa |
410 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14731401 |
gatgaaatcattcagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttgcatcctgaaaacaacagtgaaa |
14731500 |
T |
|
| Q |
411 |
gttagatcaaggcattcaatgtgttcca |
438 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
14731501 |
gttagatcaaggcattcaatgtgttcca |
14731528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 291 - 402
Target Start/End: Complemental strand, 1096089 - 1095978
Alignment:
| Q |
291 |
agaaataacaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttgca |
390 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| ||||||| | || |||||||| ||||||||||| |
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| T |
1096089 |
agaactaacaataaggagaggatgtaatcattgagaaaacaatttatcaagcagagcatgtccattcttacctgtaacagggagcacctcagaatttgca |
1095990 |
T |
|
| Q |
391 |
tcctgaaaacaa |
402 |
Q |
| |
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|||||| |||| |
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| T |
1095989 |
gcctgaatacaa |
1095978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 1096349 - 1096301
Alignment:
| Q |
25 |
tgttcttagaactaacaaatattttttaatcctctataatacataacaa |
73 |
Q |
| |
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||||||| ||||||||| | |||||| ||||| |||||||||||||||| |
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|
| T |
1096349 |
tgttcttggaactaacatacatttttcaatccgctataatacataacaa |
1096301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 129 - 351
Target Start/End: Original strand, 17592807 - 17593035
Alignment:
| Q |
129 |
cactctacagtctacaccactgagacagatagcaaaaattgtcatttcacaacctgtcctccaaggagatcttcaa------tgcttcaagtttttcaaa |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
17592807 |
cactctacagtctacaccactgagacagatagcaaaaattgtcatttcacaacctgtcctccaaggagatcttcaaccttgatgcttcaagtttttcaaa |
17592906 |
T |
|
| Q |
223 |
gtgtctctgagattaagaagttgtatttttcatgttttagaattcacaaaactcatcgattaagaaagagaaataacaataaggagaggatgaaatcatt |
322 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
17592907 |
gtgcctctgagattaagaagttgtatttttcatgttttagaattcacaaaactcatcacttaagaaagagaaatagcaataaggagaggatgaaatcatt |
17593006 |
T |
|
| Q |
323 |
gagaaaacaataaatcagtcagagcatgt |
351 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
17593007 |
gagaaaacaataaatcagtcagagcatgt |
17593035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 291 - 402
Target Start/End: Original strand, 9891194 - 9891305
Alignment:
| Q |
291 |
agaaataacaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttgca |
390 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||| |||||||||||| | |||||| |||||| ||| |
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| T |
9891194 |
agaactaacaataaggagaggatgtaatcattgagaaaacaatttatcaatcagagcatgtccattcttacctgcagcaggaagcacctaagaattcgca |
9891293 |
T |
|
| Q |
391 |
tcctgaaaacaa |
402 |
Q |
| |
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||||||||||| |
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|
| T |
9891294 |
gcctgaaaacaa |
9891305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 9890943 - 9890991
Alignment:
| Q |
25 |
tgttcttagaactaacaaatattttttaatcctctataatacataacaa |
73 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||||||||||||||| |
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|
| T |
9890943 |
tgttcttagaactaacatatatttttcaatccgctataatacataacaa |
9890991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 11831135 - 11831087
Alignment:
| Q |
25 |
tgttcttagaactaacaaatattttttaatcctctataatacataacaa |
73 |
Q |
| |
|
||||||||||||||||| | |||||| ||||| |||||||||||||||| |
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| T |
11831135 |
tgttcttagaactaacagacatttttcaatccgctataatacataacaa |
11831087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 291 - 403
Target Start/End: Original strand, 31236751 - 31236863
Alignment:
| Q |
291 |
agaaataacaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttgca |
390 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| |||||||||||| |||||||| ||||||| ||| |
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|
| T |
31236751 |
agaactaacaataaggagaggatgtaatcatcgagaaaacaatttatcactcagagcatgtccattcttacctgcagcagggagcacctcagaattcgca |
31236850 |
T |
|
| Q |
391 |
tcctgaaaacaac |
403 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31236851 |
gcctgaaaacaac |
31236863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 134 - 297
Target Start/End: Original strand, 31236536 - 31236712
Alignment:
| Q |
134 |
tacagtctacaccactgagacagatagcaaaaat--tgtcatttcacaacctgtcctccaaggagatcttca------atgcttcaagtttttcaaagtg |
225 |
Q |
| |
|
|||| |||||||||||||||||||||||| || | |||| ||||||||| |||||||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
31236536 |
tacactctacaccactgagacagatagcacaacttctgtcctttcacaacttgtcctccaacgagatcttcatccttgatgcttcaagtttttcaaagtg |
31236635 |
T |
|
| Q |
226 |
tctctgagattaagaagttgtattttt--catgttttagaattcacaaaactc---atcgattaagaaagagaaata |
297 |
Q |
| |
|
||||||||||| || ||| |||| | ||||||||||||| ||||| | || |||||||||||||| |||||| |
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|
| T |
31236636 |
actctgagattagaaaattgaatttatcacatgttttagaatccacaacattccatatcgattaagaaagggaaata |
31236712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 438
Target Start/End: Original strand, 31253407 - 31253545
Alignment:
| Q |
299 |
caataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttgcatcctgaaa |
398 |
Q |
| |
|
||||||||| |||||||| || || ||||| ||||| ||||||| ||||||| |||| |||||||||||| |||||||| ||||||||||| ||||||| |
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|
| T |
31253407 |
caataaggaaaggatgaagacagtgtgaaaataataa-tcagtcaaagcatgttcattcttacctgcagcagggagcacctcagaatttgcagcctgaaa |
31253505 |
T |
|
| Q |
399 |
acaacagtgaaagttagatcaaggcattcaatgtgttcca |
438 |
Q |
| |
|
||||| |||| ||||| ||||||||| | |||||||| |
|
|
| T |
31253506 |
acaacgacgaaaattagacaaaggcattccaggtgttcca |
31253545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 31236459 - 31236503
Alignment:
| Q |
25 |
tgttcttagaactaacaaatattttttaatcctctataatacata |
69 |
Q |
| |
|
||||||||||||||||||| |||||| |||| |||||||||||| |
|
|
| T |
31236459 |
tgttcttagaactaacaaacatttttcaatctgctataatacata |
31236503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 16133935 - 16133841
Alignment:
| Q |
25 |
tgttcttagaactaacaaatattttttaatcctctataatacataacaaaggaggaaacataagattaaataagtagcagaaagtcattgaagacaa |
121 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||| ||||||||||||| ||||||||| | |||||||||||||||||||| ||||||||||||| |
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|
| T |
16133935 |
tgttcttagaactaacaaacatttttcaatctgcta-aatacataacaaaagaggaaacaga-gattaaataagtagcagaaaatcattgaagacaa |
16133841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 401
Target Start/End: Complemental strand, 16133645 - 16133542
Alignment:
| Q |
298 |
acaataaggagaggatgaaatcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttgcatcctgaa |
397 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||| |||||| ||||| | |||| |||||||||| || || ||| |
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|
| T |
16133645 |
acaatatggagaggatgaagtcattgagaaaacaattgatcagtcagagcatgttcattcttacctacagcaggaagcagcccagaatttacagccagaa |
16133546 |
T |
|
| Q |
398 |
aaca |
401 |
Q |
| |
|
|||| |
|
|
| T |
16133545 |
aaca |
16133542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 442641 - 442557
Alignment:
| Q |
318 |
tcattgagaaaacaataaatcagtcagagcatgtccattattacctgcagcacggagcaccccagaatttgcatcctgaaaacaa |
402 |
Q |
| |
|
|||||||||||||||| |||| | |||||||||||||| |||||||||| | |||||||| ||||||||||| ||||||||||| |
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|
| T |
442641 |
tcattgagaaaacaatttatcaataagagcatgtccattcttacctgcagaagggagcacctcagaatttgcagcctgaaaacaa |
442557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 19181 - 19133
Alignment:
| Q |
25 |
tgttcttagaactaacaaatattttttaatcctctataatacataacaa |
73 |
Q |
| |
|
||||||||||||||||| | |||||| |||| |||||||||||||||| |
|
|
| T |
19181 |
tgttcttagaactaacagacatttttcaatctgctataatacataacaa |
19133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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