View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18522_high_1 (Length: 633)
Name: NF18522_high_1
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 577; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 11 - 615
Target Start/End: Complemental strand, 37000591 - 36999987
Alignment:
| Q |
11 |
catcatcatccatagaagaaacaaaaggaacagcggagagtgacactgctagtggggagctacctcagagttctgctacaccgaaggaagtgccgaagaa |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37000591 |
catcatcatccatagaagaaacaaaaggaacagcggagagtgacactgctagtggggagctacctcagagttctgctacacagaaggaagtgccgaagaa |
37000492 |
T |
|
| Q |
111 |
gtggacttgtgctttatgtattgtaacaacatcgagcgagaaaactttgaattcccacctcaatgggaggaaacacaaggctaattgtgaattagctttg |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37000491 |
gtggacttgtgctttatgtattgtaacaacatcgagcgagaaaactttgaattcccacctcaatgggaggaaacacaaggctaattgtgaattagctttg |
37000392 |
T |
|
| Q |
211 |
aaagcgataaacctgcatgaagaaccctttaggaagattaattccaaaataatatgtatagtctgcaatgttttgatttcaagtgaagaatacatggcct |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37000391 |
aaagcgataaacctgcatgaagaaccctttaggaggattaattccaaaataatatgtatagtctgcaatgttttgatttcaagtgaagaatacatggcct |
37000292 |
T |
|
| Q |
311 |
ctcacttaatagggaaaaagcacttgtctaaaattcaaacttgaaagttgctgtagataaccttaccacaaggatacattttgcttgaaaattgaaaagg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
37000291 |
ctcacttaatagggaaaaagcacttgtctaaaattcaaacttgaaagttgctgtagataaccttaccacagggatacattttgcttgaaagttgaaaagg |
37000192 |
T |
|
| Q |
411 |
aaattggtgtagcaagccttcttcacttataacagctgtaccaaaactttgctgattttcaaacggaaaatgatcattagtttgagtattgttatttttg |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37000191 |
aaattggtgtagcaagccttcttcacttataacagctgtaccaaaactttgctgattttcaaatggaaaatgatcattagtttgagtattgttatttttg |
37000092 |
T |
|
| Q |
511 |
atatgacaaacaaacaattataacgaaaggcacgtatcacttcgtgagaatgttttaagaagtcaacaaactcttaatctgctgtttggcggaaaacata |
610 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37000091 |
atacgacaaacaaacaattataacgaaaggcacgtatcatttcgtgagaatgttttaagaagtcaacaaactcttaatctgctgtttggcggaaaacata |
36999992 |
T |
|
| Q |
611 |
gaggt |
615 |
Q |
| |
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||||| |
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| T |
36999991 |
gaggt |
36999987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 239 - 482
Target Start/End: Complemental strand, 36995643 - 36995403
Alignment:
| Q |
239 |
ttaggaagattaattccaaaataatatgtatagtctgcaatgttttgatttcaagtgaagaatacatggcctctcacttaatagggaaaaagcacttgtc |
338 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||| ||| || || || ||||||| || ||| ||||||||||| ||| |||| ||||||||||| |
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| T |
36995643 |
ttaggatgattaattccaaaataatatgtaaagtctgtaatattatgcttccaagtgaggactacgtggcctctcacataaaagggtggaagcacttgtc |
36995544 |
T |
|
| Q |
339 |
taaaattcaaacttgaaagttgctgtagataaccttaccacaaggatacattttgcttgaaaattgaaaaggaaattggtgtagcaagccttcttcactt |
438 |
Q |
| |
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||| || ||| |||| |||| || |||||||| | | ||||||| ||||||||||| |||||||| |||||||||||||||||||||| |||| |
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| T |
36995543 |
taatgttaaaagttgatagttacttgagataaccatgttagaaggata---tttgcttgaaagttgaaaagaaaattggtgtagcaagccttctccactg |
36995447 |
T |
|
| Q |
439 |
ataacagctgtaccaaaactttgctgattttcaaacggaaaatg |
482 |
Q |
| |
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|||| |||||||||| ||| ||||||||| | ||| |||||||| |
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| T |
36995446 |
ataatagctgtaccataacattgctgattctaaaatggaaaatg |
36995403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 36979984 - 36979777
Alignment:
| Q |
11 |
catcatcatccatagaagaaacaaaaggaacagcggagagtgacactgctagtggggagctacctcagagttct---gctacaccgaaggaagtgccgaa |
107 |
Q |
| |
|
|||||||| |||||| |||||| ||||||| || | |||||| | ||| |||| ||| | |||| ||||||| ||||||| ||||||||||||||| |
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| T |
36979984 |
catcatcaaccatagtagaaaccaaaggaatagatggcagtgacccagctggtggagaggttcctccgagttctactgctacacagaaggaagtgccgaa |
36979885 |
T |
|
| Q |
108 |
gaagtggacttgtgctttatgtattgtaacaacatcgagcgagaaaactttgaattcccacctcaatgggaggaaacacaaggctaattgtgaattagct |
207 |
Q |
| |
|
|||||||||||||||||||| | |||||||| |||||| ||| ||| |||||||| || | |||||||||||||||| ||| ||||||| |||| |
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| T |
36979884 |
agagtggacttgtgctttatgtttggtaacaacttcgagccagataaccttgaattctcatattaatgggaggaaacacagagctgcttgtgaagcagct |
36979785 |
T |
|
| Q |
208 |
ttgaaagc |
215 |
Q |
| |
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|||||||| |
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|
| T |
36979784 |
ttgaaagc |
36979777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 231 - 608
Target Start/End: Complemental strand, 36979743 - 36979375
Alignment:
| Q |
231 |
agaaccctttaggaagattaattccaaaataatatgtatagtctgcaatgttttgatttcaagtgaagaatacatggcctctcacttaatagggaaaaag |
330 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||| |||||| |||||| || || ||||||| || || ||||| |||||| ||| || ||| |
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|
| T |
36979743 |
agaaccctttaggatgattaattccaaattaatatgtaaagtctgtaatgttatgcttccaagtgaggagtatatggcatctcacgtaaatggatggaag |
36979644 |
T |
|
| Q |
331 |
cacttgtctaaaattcaaacttgaaagttgctgtagataaccttaccacaaggatacattttgcttgaaaattgaaaaggaaattggtgtagcaagcctt |
430 |
Q |
| |
|
||||||||||||||||||| |||| |||| | ||||||| || | | || ||||||||||||||| |||||||| ||||||| |||||||| ||| |
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|
| T |
36979643 |
cacttgtctaaaattcaaagttgatagtt----ttgataaccatagcgtaggg--acattttgcttgaaagttgaaaagcaaattggggtagcaag-ctt |
36979551 |
T |
|
| Q |
431 |
cttcactta---taacagctgtaccaaaactttgctgattttcaaacggaaaatg-atcattagtttgagtattgttatttttgatatgacaaacaaaca |
526 |
Q |
| |
|
||| ||| | || | ||||||||||| |||| ||| | ||| |||||||| | |||||||| ||||||| || |||| |||| ||||| | |
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| T |
36979550 |
cttgactgatattattaagtgtaccaaaacattgccaattcttaaatggaaaatgctttattagtttaagtattgcta--tttggtatg----acaaata |
36979457 |
T |
|
| Q |
527 |
attataacgaaaggcacgtatcacttcgtgagaatgttttaagaagtcaacaaactcttaatctgctgtttggcggaaaaca |
608 |
Q |
| |
|
|||||||| |||||| | |||||| |||| ||||||||||| ||||||||||||||| || |||| ||| || ||||||| |
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|
| T |
36979456 |
attataacacaaggcaagaatcactccgtgtaaatgttttaaggagtcaacaaactcttgatttgctattttgcagaaaaca |
36979375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 36986327 - 36986226
Alignment:
| Q |
86 |
ctacaccgaaggaagtgccgaagaagtggacttgtgctttatgtattgtaacaacatcgagcgagaaaactttgaattcccacctcaatgggaggaaaca |
185 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||||||||||||| | ||||||||| |||| ||||||| |||||||||||||| | ||| | |||||| |
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|
| T |
36986327 |
ctacacagaaggaagtgcagaaagagtggacttgtgctttatgtttggtaacaacaacgagtgagaaaatcttgaattcccacctgagtggaaagaaaca |
36986228 |
T |
|
| Q |
186 |
ca |
187 |
Q |
| |
|
|| |
|
|
| T |
36986227 |
ca |
36986226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 36979003 - 36978921
Alignment:
| Q |
133 |
gtaacaacatcgagcgagaaaactttgaattcccacctcaatgggaggaaacacaaggctaattgtgaattagctttgaaagc |
215 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||| || |||||||||||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
36979003 |
gtaacaacatcgagcaagataaccttgaattcccatcttaatgggaggaaacacagggctagttgtgaagctgctttgaaagc |
36978921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 36995883 - 36995768
Alignment:
| Q |
11 |
catcatcatccatagaagaaacaaaaggaacagcggagagtgacactgctagtggggagctacctcagagttctgctacaccgaaggaagtgccgaagaa |
110 |
Q |
| |
|
|||||||| ||||| |||||| ||||||||||| ||||||| ||| ||| |||| ||| | |||||||||| |||||| ||||| ||||| ||| | |
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|
| T |
36995883 |
catcatcagccataatagaaaccaaaggaacagcagagagtgtcacagcttgtggagaggttcctcagagtt---ctacacagaaggcagtgcagaaaga |
36995787 |
T |
|
| Q |
111 |
gtggacttgtgctttatgt |
129 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
36995786 |
gtggacttgtgctttatgt |
36995768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 593
Target Start/End: Complemental strand, 9450251 - 9450178
Alignment:
| Q |
520 |
acaaacaattataacgaaaggcacgtatcacttcgtgagaatgttttaagaagtcaacaaactcttaatctgct |
593 |
Q |
| |
|
||||| ||||||||| ||||||| | |||||| |||| ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
9450251 |
acaaataattataacaaaaggcaagaatcactacgtgtaaatgttttaaggagtcaacaaactcttaatttgct |
9450178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 36980640 - 36980539
Alignment:
| Q |
86 |
ctacaccgaaggaagtgccgaagaagtggacttgtgctttatgtattgtaacaacatcgagcgagaaaactttgaattcccacctcaatgggaggaaaca |
185 |
Q |
| |
|
|||||| ||||||||||| || |||||||||||||| ||||| | |||||||||||| | |||||| |||| ||||||||| ||||| |||||||| |
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| T |
36980640 |
ctacacagaaggaagtgcagagagagtggacttgtgctatatgtttggtaacaacatcgcgtgagaaagacttgatttcccaccttaatggaaggaaaca |
36980541 |
T |
|
| Q |
186 |
ca |
187 |
Q |
| |
|
|| |
|
|
| T |
36980540 |
ca |
36980539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 36996514 - 36996414
Alignment:
| Q |
87 |
tacaccgaaggaagtgccgaagaagtggacttgtgctttatgtattgtaacaacatcgagcgagaaaactttgaattcccacctcaatgggaggaaacac |
186 |
Q |
| |
|
||||| ||||||| ||| ||| ||||||||||||||||||||| | |||||||| | ||| | ||| |||||||| ||||||| ||||||||||||| |
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| T |
36996514 |
tacacagaaggaaatgcagaaaaagtggacttgtgctttatgtttggtaacaactacaagcaataaagacttgaattcgcacctcactgggaggaaacac |
36996415 |
T |
|
| Q |
187 |
a |
187 |
Q |
| |
|
| |
|
|
| T |
36996414 |
a |
36996414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 36984468 - 36984404
Alignment:
| Q |
151 |
aaaactttgaattcccacctcaatgggaggaaacacaaggctaattgtgaattagctttgaaagc |
215 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
36984468 |
aaaacattgaattcccatcttaatgggaggaaacacagagctgcttgtgaagcagctttgaaagc |
36984404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 593
Target Start/End: Original strand, 14159956 - 14160029
Alignment:
| Q |
520 |
acaaacaattataacgaaaggcacgtatcacttcgtgagaatgttttaagaagtcaacaaactcttaatctgct |
593 |
Q |
| |
|
||||| ||||||||| ||||||| | |||||| |||| ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
14159956 |
acaaataattataaccaaaggcaagaatcactacgtgtaaatgttttaaggagtcaacaaactcttaatttgct |
14160029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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