View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18522_high_12 (Length: 406)

Name: NF18522_high_12
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18522_high_12
NF18522_high_12
[»] chr5 (10 HSPs)
chr5 (24-387)||(1757694-1758059)
chr5 (249-387)||(29568567-29568707)
chr5 (249-387)||(29569875-29570015)
chr5 (60-151)||(29166703-29166794)
chr5 (240-357)||(27918459-27918573)
chr5 (213-371)||(29166788-29166929)
chr5 (314-368)||(29425182-29425236)
chr5 (211-279)||(29425109-29425176)
chr5 (116-157)||(29570123-29570164)
chr5 (114-151)||(29568831-29568868)
[»] chr4 (7 HSPs)
chr4 (147-387)||(27481807-27482050)
chr4 (161-387)||(27461673-27461911)
chr4 (250-387)||(18985872-18986011)
chr4 (302-387)||(27521524-27521609)
chr4 (217-279)||(27521609-27521671)
chr4 (162-220)||(27521694-27521752)
chr4 (46-112)||(27481742-27481808)
[»] chr3 (2 HSPs)
chr3 (213-293)||(25518264-25518344)
chr3 (338-387)||(25518343-25518392)


Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 24 - 387
Target Start/End: Original strand, 1757694 - 1758059
Alignment:
Q  24 gaggatgcatatatatatagagagagattggtacggtgagaattagttatcgtgggttcgatcctcgacgttcgaagtctttaactctacatagagattg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1757694 gaggatgcatatatatatagagagagattggtacggtgagaattagttatcgtgggttcgatcctcgacgtccgaagtctttaactctacatagagattg 1757793  T
Q  124 atgtgattatgtggttgagcttatatatcctacatacaaaaatcagttacccttgaaaatctcaacaaatcatcatataccatctcctatatatatactc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1757794 atgtgattatgtggttgagcttatatatcctacatacaaaaatcagttacccttgaaaatctcaacaaatcatcatataccatctcctatatatatactc 1757893  T
Q  224 aaaccatccctctttgttcataactctttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaac--aaaagaaaagagttcagaag 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||    
T  1757894 aaaccatccctctttgttcataactctttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaacaaaaaagaaaacagttcagaag 1757993  T
Q  322 aatgggtgatttacagattcaacaagaatccttgttgatccctcacaaacagaaacaatccatgat 387  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1757994 aatgggtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgat 1758059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 249 - 387
Target Start/End: Complemental strand, 29568707 - 29568567
Alignment:
Q  249 ctttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaacaaaa--gaaaagagttcagaagaatgggtgatttacagattcaacaa 346  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||  ||||  | ||||||| |||| ||||| ||||||||||||||    
T  29568707 ctttgccactcacacttactttacaaccaaaattcaaattcaaatccaaaaacaaaaaagaaagcaattcagaaaaatgagtgatctacagattcaacaa 29568608  T
Q  347 gaatccttgttgatccctcacaaacagaaacaatccatgat 387  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  29568607 gaatccatgttgatccctcacaaacagaaacaatccatgat 29568567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 249 - 387
Target Start/End: Complemental strand, 29570015 - 29569875
Alignment:
Q  249 ctttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaacaaaa--gaaaagagttcagaagaatgggtgatttacagattcaacaa 346  Q
    |||||| ||||||||| ||||||| ||||||||||||||||||||| ||||||||||  ||||| | |  ||||||| | ||| | ||||||||||||||    
T  29570015 ctttgccactcacactaactttactaccaaagttcaaattcaaatccaaaaacaaaaaagaaaacaatctagaagaacgagtggtctacagattcaacaa 29569916  T
Q  347 gaatccttgttgatccctcacaaacagaaacaatccatgat 387  Q
    |||||| | ||||||||||||||||| ||||||||||||||    
T  29569915 gaatccattttgatccctcacaaacacaaacaatccatgat 29569875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 29166703 - 29166794
Alignment:
Q  60 tgagaattagttatcgtgggttcgatcctcgacgttcgaagtctttaactctacatagagattgatgtgattatgtggttgagcttatatat 151  Q
    ||||| ||||||||||||||||||||||||||||   ||||||| ||||| || ||||||||||||| |||||||||||||||| |||||||    
T  29166703 tgagagttagttatcgtgggttcgatcctcgacgcctgaagtctctaactttatatagagattgatgggattatgtggttgagcctatatat 29166794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 240 - 357
Target Start/End: Original strand, 27918459 - 27918573
Alignment:
Q  240 ttcataactctttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaacaaaagaaaagagttcagaagaatgggtgatttacagat 339  Q
    ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||  || || ||| | ||||| |||||| ||||| |||||||    
T  27918459 ttcataactctttgccactcagacttactttgcaaccaaagttcaaattcaaatccaaaa--aacag-aaacaattcagcagaatgagtgatctacagat 27918555  T
Q  340 tcaacaagaatccttgtt 357  Q
    ||||||||||||| ||||    
T  27918556 tcaacaagaatccatgtt 27918573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 213 - 371
Target Start/End: Original strand, 29166788 - 29166929
Alignment:
Q  213 tatatatactcaaaccatccctctttgttcataactctttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaacaaaagaaaaga 312  Q
    ||||||||||| |||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||                 || | ||||||||| |    
T  29166788 tatatatactccaaccttccctcttttttcataactctttgccactcacacttactttacaaccaaa-----------------aacaaaaaagaaaaca 29166870  T
Q  313 gttcagaagaatgggtgatttacagattcaacaagaatccttgttgatccctcacaaac 371  Q
     || ||||||||| ||||| |||||||||||||||||||| || |||||||||||||||    
T  29166871 attgagaagaatgagtgatctacagattcaacaagaatccatgatgatccctcacaaac 29166929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 314 - 368
Target Start/End: Original strand, 29425182 - 29425236
Alignment:
Q  314 ttcagaagaatgggtgatttacagattcaacaagaatccttgttgatccctcaca 368  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29425182 ttcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcaca 29425236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 29425109 - 29425176
Alignment:
Q  211 tatatatatactcaaaccatccctctttgttcataactctttgcgactcacacttactttacaaccaaa 279  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  29425109 tatatatataatcaaaccttccctcttt-ttcataactctttgccactcacacttactttacaaccaaa 29425176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 29570164 - 29570123
Alignment:
Q  116 agagattgatgtgattatgtggttgagcttatatatcctaca 157  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  29570164 agagattgatgtgattatatggttgagcttatatatcctaca 29570123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 29568868 - 29568831
Alignment:
Q  114 atagagattgatgtgattatgtggttgagcttatatat 151  Q
    |||||||||||||||||||| |||||||||||||||||    
T  29568868 atagagattgatgtgattatttggttgagcttatatat 29568831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 147 - 387
Target Start/End: Original strand, 27481807 - 27482050
Alignment:
Q  147 tatatcctacatacaaaaatcagttacccttgaaaatctcaacaaatcatcatataccatctc--ctatatatatactcaaaccatccctctttgttcat 244  Q
    |||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||  ||||||||||||||||||||| ||||||| |||||    
T  27481807 tatatcctacctacaaaaatcagttacccttgaaaacctca-caaatcatcatataccatctctcctatatatatactcaaaccatacctcttttttcat 27481905  T
Q  245 aactctttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaac--aaaagaaaagagttcagaagaatgggtgatttacagattca 342  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||  |||| |||| | |||||||||||||||||||||||||||||    
T  27481906 aactctttgccactcacacttactttacaaccaaagctcaaattcaaatctaaaaacaaaaaacaaaacaattcagaagaatgggtgatttacagattca 27482005  T
Q  343 acaagaatccttgttgatccctcacaaacagaaacaatccatgat 387  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  27482006 acaagaatccatgttgatccctcacaaacagaaacaatccatgat 27482050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 161 - 387
Target Start/End: Original strand, 27461673 - 27461911
Alignment:
Q  161 aaaaatcagttacccttgaaaatctcaacaaatcatcatataccatctcctatatatata----------ctcaaaccatccctctttgttcataactct 250  Q
    |||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||          |||||||||||||||||| |||||||||||    
T  27461673 aaaaatcaattacccttgaaaacctcaacagatcatcatataccatctcctatatatatatatatatacactcaaaccatccctcttttttcataactct 27461772  T
Q  251 ttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaacaaa--agaaaagagttcagaagaatgggtgatttacagattcaacaaga 348  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||  |||||| | |||||||||||||||||||||||||||||||||||    
T  27461773 ttgccactcacacttactttacaatcaaagttcaaattcaaatctaaaaacaaaagagaaaacaattcagaagaatgggtgatttacagattcaacaaga 27461872  T
Q  349 atccttgttgatccctcacaaacagaaacaatccatgat 387  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  27461873 atccatgttgatccctcacaaacagaaacaatccatgat 27461911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 250 - 387
Target Start/End: Original strand, 18985872 - 18986011
Alignment:
Q  250 tttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaacaaaa--gaaaagagttcagaagaatgggtgatttacagattcaacaag 347  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||  ||||| | ||||||||||||||||||||||| ||||||||||    
T  18985872 tttgccactcacacttactttacgaccaaagttcaaattcaaatctaaaaagaaaaaagaaaacaattcagaagaatgggtgatttacaaattcaacaag 18985971  T
Q  348 aatccttgttgatccctcacaaacagaaacaatccatgat 387  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  18985972 aatccatggtgatccctcacaaacagaaacaatccatgat 18986011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 27521609 - 27521524
Alignment:
Q  302 aaaagaaaagagttcagaagaatgggtgatttacagattcaacaagaatccttgttgatccctcacaaacagaaacaatccatgat 387  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27521609 aaaagaaaacaattcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgat 27521524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 27521671 - 27521609
Alignment:
Q  217 tatactcaaaccatccctctttgttcataactctttgcgactcacacttactttacaaccaaa 279  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  27521671 tatactcaaaccatccctcttttttcataactctttgccactcacacttactttacaatcaaa 27521609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 27521752 - 27521694
Alignment:
Q  162 aaaatcagttacccttgaaaatctcaacaaatcatcatataccatctcctatatatata 220  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  27521752 aaaatcagttacccttgaaaacctcaacagatcatcatataccatctcctatatatata 27521694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 27481742 - 27481808
Alignment:
Q  46 agagattggtacggtgagaattagttatcgtgggttcgatcctcgacgttcgaagtctttaactcta 112  Q
    |||||||||||| |||||||||||||||| ||||||||||||||| || ||||||||| ||||||||    
T  27481742 agagattggtacagtgagaattagttatcatgggttcgatcctcggcgctcgaagtctctaactcta 27481808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 25518264 - 25518344
Alignment:
Q  213 tatatatactcaaaccatccctctttgttcataactctttgcgactcacacttactttacaaccaaagttcaaattcaaat 293  Q
    |||||||||||||||| ||||||||| |||| |||||||||| |||||||||||||||||||| ||| |||||||||||||    
T  25518264 tatatatactcaaaccttccctcttttttcacaactctttgccactcacacttactttacaacaaaaattcaaattcaaat 25518344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 387
Target Start/End: Original strand, 25518343 - 25518392
Alignment:
Q  338 attcaacaagaatccttgttgatccctcacaaacagaaacaatccatgat 387  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25518343 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgat 25518392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University