View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_high_22 (Length: 333)
Name: NF18522_high_22
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_high_22 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 54 - 317
Target Start/End: Original strand, 21382 - 21647
Alignment:
| Q |
54 |
actcgttaacatttccgttagactttttataagtgtctttaaaatacttgttagtatttcccttnnnnnnncacctaaaatagaatagtcaaatcaataa |
153 |
Q |
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| T |
21382 |
actcgttaacatttcctttagtctttttataagtgtctttagaatacttgtcagtatttcccttaaaaaa-cacctaaaatagaatagtcagatcaataa |
21480 |
T |
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| Q |
154 |
aattcatataaaactaata---tcctatattgatattaattgatccaaaatattgtatgtataatgtccacgtgctatatcaagttatcttcaaaaacct |
250 |
Q |
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| T |
21481 |
aaatcatataaaactaatacaatcctatattgatattaattgatccaaaatattgtatgtataatgtccacgtgctatatcaagttatcttcaaaaacct |
21580 |
T |
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| Q |
251 |
tttggttcaattattcaatactgctacaacttacaataacgatgccaaagaaaaaagtacatagaag |
317 |
Q |
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| T |
21581 |
tttggttcaattattcaatactgttacaacttacaataacgatgccaaagaaaaaagtacatagaag |
21647 |
T |
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