View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_high_24 (Length: 322)
Name: NF18522_high_24
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 24 - 308
Target Start/End: Complemental strand, 36956445 - 36956162
Alignment:
| Q |
24 |
atctaacaatcatcaatatgttgaatgtgtgaagacatatattgttggccgtagtgatccatatcgaaaatgatggaggtaatgtagcaaaatagtgttg |
123 |
Q |
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| T |
36956445 |
atctaacaatcaacgatgtgttgaatgtgtaaatgcatgtattgttggccgcagtgatctatatccaaaatgatggaggtaatgtagcaaaatagtgttg |
36956346 |
T |
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| Q |
124 |
tggtggtgacaattggcaatttgagtactagtgcaccatttattttaactgtgtaacataaactaaacctatcatcactatttaaaacttnnnnnnnnnn |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||||||||||| || |
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| T |
36956345 |
tggtggtgacaattggcaatttgagtactagtgcaccattt-ttttaattgtgtaacataaactaaacctatagttactatttaaaatttaaaaataaaa |
36956247 |
T |
|
| Q |
224 |
nncttgctatgacgtgaaagatgtgctagcttcctatttatgtattttcccctgcaaatagttgagattccttgacagcaatttg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36956246 |
aacttgctatgacgtgaaagatgtgctagcttcctatttatgtattttcccctgcaaatagttgagattccttgacagcaatttg |
36956162 |
T |
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