View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18522_high_3 (Length: 542)

Name: NF18522_high_3
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18522_high_3
NF18522_high_3
[»] chr2 (10 HSPs)
chr2 (244-526)||(19981735-19982031)
chr2 (65-120)||(19981536-19981591)
chr2 (400-473)||(2029902-2029976)
chr2 (400-473)||(5711551-5711625)
chr2 (400-473)||(14466287-14466361)
chr2 (400-473)||(16419400-16419474)
chr2 (406-473)||(16533451-16533519)
chr2 (406-473)||(40149115-40149181)
chr2 (401-474)||(17525210-17525284)
chr2 (400-453)||(18607142-18607195)
[»] chr5 (15 HSPs)
chr5 (406-473)||(18885366-18885434)
chr5 (400-473)||(24269982-24270056)
chr5 (400-473)||(24346613-24346687)
chr5 (400-473)||(17015988-17016061)
chr5 (400-473)||(41666869-41666943)
chr5 (400-473)||(43117780-43117853)
chr5 (406-473)||(8081226-8081294)
chr5 (406-473)||(18333577-18333644)
chr5 (407-473)||(33337350-33337417)
chr5 (414-473)||(38731715-38731774)
chr5 (407-473)||(95378-95445)
chr5 (414-473)||(32908830-32908889)
chr5 (404-473)||(24531736-24531806)
chr5 (400-473)||(25258178-25258252)
chr5 (400-473)||(25321968-25322042)
[»] chr8 (17 HSPs)
chr8 (400-473)||(20301394-20301468)
chr8 (400-473)||(21088026-21088100)
chr8 (400-467)||(35682900-35682967)
chr8 (400-454)||(31197747-31197801)
chr8 (408-474)||(422328-422396)
chr8 (406-473)||(7669558-7669625)
chr8 (400-473)||(3157121-3157195)
chr8 (400-473)||(5932061-5932135)
chr8 (415-473)||(39960105-39960163)
chr8 (400-473)||(41790791-41790865)
chr8 (400-465)||(18004215-18004280)
chr8 (406-475)||(29005995-29006064)
chr8 (414-473)||(3157436-3157496)
chr8 (414-473)||(8084274-8084334)
chr8 (414-473)||(11232306-11232366)
chr8 (413-465)||(20094681-20094733)
chr8 (400-475)||(37867943-37868019)
[»] chr7 (10 HSPs)
chr7 (403-473)||(40746145-40746215)
chr7 (400-473)||(36277103-36277177)
chr7 (406-473)||(22574740-22574808)
chr7 (400-473)||(36993186-36993259)
chr7 (399-473)||(29469737-29469812)
chr7 (400-462)||(1596726-1596788)
chr7 (407-465)||(2315147-2315205)
chr7 (400-473)||(3519837-3519911)
chr7 (400-473)||(21861427-21861501)
chr7 (400-473)||(2404286-2404359)
[»] chr4 (12 HSPs)
chr4 (322-397)||(51695980-51696055)
chr4 (400-473)||(35788793-35788866)
chr4 (406-473)||(5398323-5398390)
chr4 (400-473)||(5398587-5398661)
chr4 (400-473)||(28245638-28245712)
chr4 (400-473)||(50543442-50543516)
chr4 (404-474)||(52559706-52559777)
chr4 (406-464)||(21646389-21646446)
chr4 (400-473)||(35796854-35796928)
chr4 (400-473)||(40717318-40717392)
chr4 (415-475)||(1215903-1215964)
chr4 (403-475)||(30305411-30305483)
[»] chr6 (6 HSPs)
chr6 (400-473)||(4868689-4868763)
chr6 (406-465)||(6400741-6400800)
chr6 (400-473)||(13353334-13353408)
chr6 (400-473)||(33796459-33796533)
chr6 (335-378)||(6054227-6054270)
chr6 (400-473)||(9705154-9705226)
[»] chr1 (9 HSPs)
chr1 (400-473)||(4112883-4112957)
chr1 (400-473)||(25145597-25145671)
chr1 (400-473)||(26177041-26177115)
chr1 (406-469)||(39348233-39348297)
chr1 (406-465)||(2859513-2859572)
chr1 (400-465)||(4112661-4112726)
chr1 (400-465)||(7307854-7307919)
chr1 (400-465)||(25713291-25713356)
chr1 (414-473)||(369779-369839)
[»] scaffold0692 (1 HSPs)
scaffold0692 (400-465)||(5640-5705)
[»] chr3 (7 HSPs)
chr3 (400-473)||(16239725-16239799)
chr3 (400-473)||(20303176-20303250)
chr3 (404-473)||(31317368-31317438)
chr3 (406-473)||(19954330-19954397)
chr3 (400-473)||(4155457-4155531)
chr3 (400-473)||(20327726-20327800)
chr3 (414-473)||(34992753-34992813)
[»] scaffold0048 (1 HSPs)
scaffold0048 (413-473)||(81987-82048)
[»] scaffold0519 (1 HSPs)
scaffold0519 (414-473)||(2063-2123)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 7e-78; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 244 - 526
Target Start/End: Original strand, 19981735 - 19982031
Alignment:
Q  244 ataattgattattgttaaagagttcctcatcacacaaaagat------------tatttataaatggaggaatcttcacttcacaagtaaattttataga 331  Q
    ||||||||||||||||||||||| | ||||||||||||||||            |||||||||||||||||||| |||||||||||| || |||||||||    
T  19981735 ataattgattattgttaaagagtccttcatcacacaaaagatgatctaaacatgtatttataaatggaggaatcctcacttcacaagcaagttttataga 19981834  T
Q  332 gttgtgttatactcaactacgatttcgaagatgatatcagaacctctcttaagatccactgggtcatcttccgttatcggaccacccaccatttgtgtct 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||   ||||||||||||||||||||||||||    
T  19981835 gttgtgttatactcaactacgatttcgaagatgatatcagaacctctcttaagatccattgagtcatcttctactatcggaccacccaccatttgtgtct 19981934  T
Q  432 atgaaccaagttcaatagtgctggtcatgag-gggtgtgttaaagctcatatcgcacaaagga-ggcccccacacttgtttataagttgggacagtc 526  Q
    | |||||||  |||||||||||  |  |||| |||||||||||||||||||| ||||||| || | |||||| |||||||||||| |||| ||||||    
T  19981935 acgaaccaaactcaatagtgctaattgtgagagggtgtgttaaagctcatatggcacaaaagatgtcccccaaacttgtttataaattggaacagtc 19982031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 19981536 - 19981591
Alignment:
Q  65 tgttacatgatatgtttataaacccgttttcttgaaataattagcacatgctttgg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19981536 tgttacatgatatgtttataaacccgttttcttgaaataattagcacatgctttgg 19981591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 2029902 - 2029976
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| |||||||||||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  2029902 ttccgctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 2029976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 5711625 - 5711551
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||||||||||| ||||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  5711625 ttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 5711551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 14466361 - 14466287
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| |||||| ||||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  14466361 ttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 14466287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 16419400 - 16419474
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| |||||  ||||||||||||| |||| | |||||||| ||||||||||||||| ||| ||||||||||||    
T  16419400 ttccgctatcgagccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtgagggggtgtgttaa 16419474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 473
Target Start/End: Original strand, 16533451 - 16533519
Alignment:
Q  406 tatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgag-gggtgtgttaa 473  Q
    |||||| ||||||||||||| |||| | ||||||||  |||||||||||||| |||| |||||||||||    
T  16533451 tatcgggccacccaccatttatgtccacgaaccaaggccaatagtgctggtcgtgagagggtgtgttaa 16533519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 473
Target Start/End: Complemental strand, 40149181 - 40149115
Alignment:
Q  406 tatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggggtgtgttaa 473  Q
    ||||||||||||||| |||| |||| | ||||||||  |||||||||||||| ||| |||||||||||    
T  40149181 tatcggaccacccactatttatgtccacgaaccaagcccaatagtgctggtcgtga-gggtgtgttaa 40149115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 474
Target Start/End: Complemental strand, 17525284 - 17525210
Alignment:
Q  401 tccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgag-gggtgtgttaaa 474  Q
    |||| |||||| ||||||||||||| |||| | ||||||||  |||||||| ||||| |||| ||||||||||||    
T  17525284 tccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgatggtcgtgagtgggtgtgttaaa 17525210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 453
Target Start/End: Complemental strand, 18607195 - 18607142
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgct 453  Q
    |||||||||||| | ||||||||||| |||||| ||||||||  ||||||||||    
T  18607195 ttccgttatcgggcaacccaccatttatgtctacgaaccaagcccaatagtgct 18607142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 406 - 473
Target Start/End: Original strand, 18885366 - 18885434
Alignment:
Q  406 tatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgag-gggtgtgttaa 473  Q
    |||||||||||||||||||| |||||||||||||||  |||||||||||||| |||| |||||||||||    
T  18885366 tatcggaccacccaccatttatgtctatgaaccaagcccaatagtgctggtcgtgagagggtgtgttaa 18885434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 24270056 - 24269982
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||||||||||| ||||||||||||| |||| | |||||||| ||||||||||||||| ||| ||||||||||||    
T  24270056 ttccgttatcgggccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtgagggggtgtgttaa 24269982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 24346687 - 24346613
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||||||||||| ||||||||||||| |||| | |||||||| ||||||||||||||| ||| ||||||||||||    
T  24346687 ttccgttatcgggccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtgagggggtgtgttaa 24346613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 17016061 - 17015988
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggggtgtgttaa 473  Q
    ||||| |||||||||||||||||||| |||| | ||||||||| |||||||| ||||| |||||| ||||||||    
T  17016061 ttccgctatcggaccacccaccatttatgtccacgaaccaagtccaatagtgttggtcgtgagggttgtgttaa 17015988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 41666943 - 41666869
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||||||||||| ||||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  41666943 ttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 41666869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 43117780 - 43117853
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggggtgtgttaa 473  Q
    ||||| |||||||||||||| ||||| |||| | |||||||| ||||||||| ||||| ||||||| |||||||    
T  43117780 ttccgctatcggaccacccatcatttatgtccacgaaccaagctcaatagtgttggtcgtgaggggggtgttaa 43117853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 473
Target Start/End: Complemental strand, 8081294 - 8081226
Alignment:
Q  406 tatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||||||||||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  8081294 tatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 8081226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 473
Target Start/End: Complemental strand, 18333644 - 18333577
Alignment:
Q  406 tatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggggtgtgttaa 473  Q
    |||||| ||||||||||||| |||| | ||||||||  || ||||||||||| |||||||||||||||    
T  18333644 tatcgggccacccaccatttatgtccacgaaccaagcccattagtgctggtcgtgaggggtgtgttaa 18333577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 407 - 473
Target Start/End: Complemental strand, 33337417 - 33337350
Alignment:
Q  407 atcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| ||||||||||||| |||| | ||||||||  |||||||||||||||||| ||||||||||||    
T  33337417 atcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcatgagggggtgtgttaa 33337350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 38731774 - 38731715
Alignment:
Q  414 cacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggggtgtgttaa 473  Q
    |||||| ||||| |||| ||||||||||  |||||||||||||| |||||||||||||||    
T  38731774 cacccatcatttatgtccatgaaccaagcccaatagtgctggtcgtgaggggtgtgttaa 38731715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 473
Target Start/End: Complemental strand, 95445 - 95378
Alignment:
Q  407 atcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| ||||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  95445 atcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 95378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 32908889 - 32908830
Alignment:
Q  414 cacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggggtgtgttaa 473  Q
    |||||||||||| |||| | |||||||   |||||||||||||| |||||||||||||||    
T  32908889 cacccaccatttatgtcaacgaaccaaacccaatagtgctggtcgtgaggggtgtgttaa 32908830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 473
Target Start/End: Original strand, 24531736 - 24531806
Alignment:
Q  404 gttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||||| |||||||| ||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  24531736 gttatcgaaccacccaacatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 24531806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 25258252 - 25258178
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| ||||||||||||||| |||| |||| | ||||||||   |||| |||||||||||| ||||||||||||    
T  25258252 ttccgctatcggaccacccacaatttatgtccacgaaccaagccaaataatgctggtcatgagggggtgtgttaa 25258178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 25322042 - 25321968
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| ||||||||||||||| |||| |||| | ||||||||   |||| |||||||||||| ||||||||||||    
T  25322042 ttccgctatcggaccacccacaatttatgtccacgaaccaagccaaataatgctggtcatgagggggtgtgttaa 25321968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 20301394 - 20301468
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| |||||||||||||||||||| |||||| ||||||||  |||||||||||||| ||| ||||||||||||    
T  20301394 ttccgctatcggaccacccaccatttatgtctacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 20301468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 21088026 - 21088100
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| |||||||||||||||||||| |||||| ||||||||  |||||||||||||| ||| ||||||||||||    
T  21088026 ttccgctatcggaccacccaccatttatgtctacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 21088100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 467
Target Start/End: Complemental strand, 35682967 - 35682900
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggggtg 467  Q
    ||||| |||||| ||||||||||||| |||| | |||||||| ||||||||||||||| |||||||||    
T  35682967 ttccgctatcgggccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtgaggggtg 35682900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 454
Target Start/End: Original strand, 31197747 - 31197801
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctg 454  Q
    ||||| |||||||||||||||||||| |||| | |||||||| ||||||||||||    
T  31197747 ttccgctatcggaccacccaccatttatgtccacgaaccaagctcaatagtgctg 31197801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 408 - 474
Target Start/End: Complemental strand, 422396 - 422328
Alignment:
Q  408 tcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcat--gaggggtgtgttaaa 474  Q
    |||| ||||||||||||| |||| | ||||||||||||||| || |||||||  |||||||||||||||    
T  422396 tcgggccacccaccatttttgtccacgaaccaagttcaataatgttggtcatgagaggggtgtgttaaa 422328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 473
Target Start/End: Original strand, 7669558 - 7669625
Alignment:
Q  406 tatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggg-gtgtgttaa 473  Q
    |||||||||||||||||||| |||| | |||||||| || |||||||||||| |||||| |||||||||    
T  7669558 tatcggaccacccaccatttatgtccacgaaccaagctc-atagtgctggtcgtgagggtgtgtgttaa 7669625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 3157195 - 3157121
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| ||||||  |||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  3157195 ttccgctatcgggacacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 3157121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 5932135 - 5932061
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatg-aggggtgtgttaa 473  Q
    |||||||||||| ||||||||||||| |||| |  |||||||  |||||||||||||| || | |||||||||||    
T  5932135 ttccgttatcgggccacccaccatttatgtcgacaaaccaagcgcaatagtgctggtcgtgaaagggtgtgttaa 5932061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 473
Target Start/End: Original strand, 39960105 - 39960163
Alignment:
Q  415 acccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggggtgtgttaa 473  Q
    ||||||||||| |||| | ||||||||  |||||||||||||| ||||||| |||||||    
T  39960105 acccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgaggggggtgttaa 39960163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 41790791 - 41790865
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| |||||  ||||||||||||| |||| ||||||||||  ||| |||||||||| ||| ||||||||||||    
T  41790791 ttccgctatcgagccacccaccatttatgtccatgaaccaagcccaagagtgctggtcgtgagggggtgtgttaa 41790865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 18004280 - 18004215
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgagggg 465  Q
    ||||| |||||| ||||||||||||| |||| | ||||||||   ||||||||||||| |||||||    
T  18004280 ttccgctatcgggccacccaccatttatgtccacgaaccaagcctaatagtgctggtcgtgagggg 18004215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 475
Target Start/End: Original strand, 29005995 - 29006064
Alignment:
Q  406 tatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggggtgtgttaaag 475  Q
    |||||| ||||||||||||| |||| |||| | |||  |||||||||||||| ||||| |||| ||||||    
T  29005995 tatcgggccacccaccatttatgtccatgagcgaagcccaatagtgctggtcgtgaggagtgtattaaag 29006064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 3157496 - 3157436
Alignment:
Q  414 cacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgag-gggtgtgttaa 473  Q
    |||||||||||| |||| | ||||||||  |||||||||||||| |||| |||||||||||    
T  3157496 cacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagtgggtgtgttaa 3157436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 473
Target Start/End: Original strand, 8084274 - 8084334
Alignment:
Q  414 cacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  8084274 cacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 8084334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 473
Target Start/End: Complemental strand, 11232366 - 11232306
Alignment:
Q  414 cacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  11232366 cacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 11232306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 465
Target Start/End: Complemental strand, 20094733 - 20094681
Alignment:
Q  413 ccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgagggg 465  Q
    ||||||||||||| |||| | ||||||||  |||||||||||||| |||||||    
T  20094733 ccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggg 20094681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 475
Target Start/End: Complemental strand, 37868019 - 37867943
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggg-gtgtgttaaag 475  Q
    ||||| ||| || ||||||||||||| |||| | ||||||||  |||||||| ||||| |||||| |||||||||||    
T  37868019 ttccgctattgggccacccaccatttatgtccacgaaccaaggccaatagtgttggtcgtgagggtgtgtgttaaag 37867943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 403 - 473
Target Start/End: Complemental strand, 40746215 - 40746145
Alignment:
Q  403 cgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggggtgtgttaa 473  Q
    |||||||| |||||||||||||| |||| | ||||||||  |||||||||||||| |||||||||||||||    
T  40746215 cgttatcgaaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgaggggtgtgttaa 40746145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 36277177 - 36277103
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| |||||||||||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  36277177 ttccgctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 36277103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 473
Target Start/End: Original strand, 22574740 - 22574808
Alignment:
Q  406 tatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgagg-ggtgtgttaa 473  Q
    |||||||||||||||||||| |||||| ||||||||  |||||||| ||||| ||||| ||||||||||    
T  22574740 tatcggaccacccaccatttatgtctacgaaccaagcccaatagtgttggtcgtgaggtggtgtgttaa 22574808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 36993259 - 36993186
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggggtgtgttaa 473  Q
    ||||| ||| ||||||||||| |||| |||  | ||| |||||||||||||||||||| ||||| |||||||||    
T  36993259 ttccgctattggaccacccactatttatgttcacgaatcaagttcaatagtgctggtcgtgaggtgtgtgttaa 36993186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 473
Target Start/End: Original strand, 29469737 - 29469812
Alignment:
Q  399 cttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||||| |||||| ||||||||||||| |||| | ||| ||||  |||||||||||||| ||| ||||||||||||    
T  29469737 cttccgctatcgggccacccaccatttatgtccacgaatcaagcccaatagtgctggtcgtgagggggtgtgttaa 29469812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 462
Target Start/End: Original strand, 1596726 - 1596788
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgag 462  Q
    ||||| |||||| ||||||||||||| |||| | ||||||||  |||||||||||||| ||||    
T  1596726 ttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgag 1596788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 465
Target Start/End: Complemental strand, 2315205 - 2315147
Alignment:
Q  407 atcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgagggg 465  Q
    ||||||||||||||||||| |||| | ||||||||  |||||||| ||||| |||||||    
T  2315205 atcggaccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtgagggg 2315147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 3519911 - 3519837
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| |||||| ||||||||||||| |||| | ||||||||  ||||| |||||||| ||| ||||||||||||    
T  3519911 ttccgctatcgggccacccaccatttatgtccacgaaccaagcccaataatgctggtcgtgagggggtgtgttaa 3519837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 21861427 - 21861501
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| |||||| ||||||||||||| |||| | ||||||||   ||||||||||||| ||| ||||||||||||    
T  21861427 ttccgctatcgggccacccaccatttatgtccacgaaccaagcctaatagtgctggtcgtgagggggtgtgttaa 21861501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 2404359 - 2404286
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggggtgtgttaa 473  Q
    ||||| ||| |||||||| ||| ||| |||| | ||||||||  |||||||||||||| |||| ||||||||||    
T  2404359 ttccgctattggaccacctaccgtttatgtccacgaaccaagcgcaatagtgctggtcgtgagaggtgtgttaa 2404286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 397
Target Start/End: Complemental strand, 51696055 - 51695980
Alignment:
Q  322 attttatagagttgtgttatactcaactacgatttcgaagatgatatcagaacctctcttaagatccactgggtca 397  Q
    ||||| ||| ||||||||| ||||| ||||||||||||||||| ||| ||||||||| ||||||| || |||||||    
T  51696055 attttgtagggttgtgttagactcacctacgatttcgaagatggtattagaacctctgttaagattcattgggtca 51695980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 35788793 - 35788866
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggggtgtgttaa 473  Q
    |||||||||| | ||||||||||||| |||| | ||||||||  |||||||||||||| ||||||| |||||||    
T  35788793 ttccgttatcaggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgaggggggtgttaa 35788866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 473
Target Start/End: Complemental strand, 5398390 - 5398323
Alignment:
Q  406 tatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggggtgtgttaa 473  Q
    |||||||||||||||||||| |||| | ||||||||  ||||| || ||||| |||||||||||||||    
T  5398390 tatcggaccacccaccatttatgtccacgaaccaagcccaataatgttggtcgtgaggggtgtgttaa 5398323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 5398661 - 5398587
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| |||||||||||||||||||| |||| | ||||||||   ||||||||||||| ||| ||||||||||||    
T  5398661 ttccgctatcggaccacccaccatttatgtccacgaaccaagccaaatagtgctggtcgtgagggggtgtgttaa 5398587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 28245712 - 28245638
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| |||||| ||||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  28245712 ttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgatggggtgtgttaa 28245638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 50543516 - 50543442
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||||||||||| ||||||||||||| |||| | ||||||||  |||||||| ||||| ||| ||||||||||||    
T  50543516 ttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtgagggggtgtgttaa 50543442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 474
Target Start/End: Original strand, 52559706 - 52559777
Alignment:
Q  404 gttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaaa 474  Q
    |||||||| ||||||||||||| |||| | ||||||||  |||||||||||||  ||| |||||||||||||    
T  52559706 gttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggttgtgagggggtgtgttaaa 52559777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 464
Target Start/End: Complemental strand, 21646446 - 21646389
Alignment:
Q  406 tatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggg 464  Q
    |||||||||||| ||||||| |||| ||||||||||| |||||||| ||||| ||||||    
T  21646446 tatcggaccacc-accatttatgtccatgaaccaagtccaatagtgttggtcgtgaggg 21646389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 35796928 - 35796854
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| |||||| ||||||||||||| | || | ||||||||  |||||||||||||| ||| ||||||||||||    
T  35796928 ttccgctatcgggccacccaccatttatctccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 35796854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 40717392 - 40717318
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| |||||||||||||||||||| |||| |  |||||||   ||||||||||||| ||| ||||||||||||    
T  40717392 ttccgctatcggaccacccaccatttatgtccacaaaccaagcctaatagtgctggtcgtgagggggtgtgttaa 40717318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 475
Target Start/End: Original strand, 1215903 - 1215964
Alignment:
Q  415 acccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggg-gtgtgttaaag 475  Q
    ||||||||||| |||| | ||||||||| |||||||| ||||||| |||| |||||||||||    
T  1215903 acccaccatttatgtccacgaaccaagtccaatagtgttggtcataagggagtgtgttaaag 1215964  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 475
Target Start/End: Original strand, 30305411 - 30305483
Alignment:
Q  403 cgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggggtgtgttaaag 475  Q
    ||||||||||||||||| ||||| | | |||| ||||| | |||||||| ||| | ||||||| |||||||||    
T  30305411 cgttatcggaccacccaacatttatatttatgcaccaaatccaatagtgttgggcgtgaggggggtgttaaag 30305483  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 4868763 - 4868689
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||||||||||| ||||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  4868763 ttccgttatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 4868689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 465
Target Start/End: Complemental strand, 6400800 - 6400741
Alignment:
Q  406 tatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgagggg 465  Q
    |||||||||||||||||||| |||| | ||||||||  |||||||||||||| |||||||    
T  6400800 tatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggg 6400741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 13353334 - 13353408
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| |||||| ||||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  13353334 ttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 13353408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 33796459 - 33796533
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| |||||| ||||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  33796459 ttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 33796533  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 6054227 - 6054270
Alignment:
Q  335 gtgttatactcaactacgatttcgaagatgatatcagaacctct 378  Q
    |||||| ||||||| |||||||| ||||||||||||||||||||    
T  6054227 gtgttagactcaaccacgatttctaagatgatatcagaacctct 6054270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 9705154 - 9705226
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||| ||||||| ||||||||||||| |||| |  |||||||| |||||||||||||| ||| ||||||||||||    
T  9705154 ttccattatcgggccacccaccatttatgtcca--aaccaagtccaatagtgctggtcgtgagggggtgtgttaa 9705226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 4112957 - 4112883
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| ||| |||||||||||||||| |||| | |||||||| ||||||||||||||| ||| ||||||||||||    
T  4112957 ttccgctattggaccacccaccatttatgtccacgaaccaagctcaatagtgctggtcgtgagggggtgtgttaa 4112883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 25145671 - 25145597
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||||||||||||||||||||||||  |||| | ||| |||| ||||||||||||||| ||| ||||||||||||    
T  25145671 ttccgttatcggaccacccaccattaatgtccacgaatcaagctcaatagtgctggtcgtgagggggtgtgttaa 25145597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 26177041 - 26177115
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    ||||| |||||||||||||||||||| | || | ||||||||| |||||||||||||| ||| ||||||||||||    
T  26177041 ttccgctatcggaccacccaccatttatatccacgaaccaagtccaatagtgctggtcgtgacggggtgtgttaa 26177115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 469
Target Start/End: Complemental strand, 39348297 - 39348233
Alignment:
Q  406 tatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtg 469  Q
    |||||||||||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||    
T  39348297 tatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgacggggtgtg 39348233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 465
Target Start/End: Complemental strand, 2859572 - 2859513
Alignment:
Q  406 tatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgagggg 465  Q
    |||||| ||||||||||||| |||| | ||||||||  |||||||||||||| |||||||    
T  2859572 tatcgggccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggg 2859513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 4112726 - 4112661
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgagggg 465  Q
    ||||| ||||| |||||||||||||| |||| | ||||||||  |||||||| ||||| |||||||    
T  4112726 ttccgctatcgaaccacccaccatttatgtcaacgaaccaagcccaatagtgttggtcgtgagggg 4112661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 7307854 - 7307919
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgagggg 465  Q
    ||||| ||| |||||||||||||||| |||| | ||||||| | |||||||| ||||| |||||||    
T  7307854 ttccgctattggaccacccaccatttatgtccacgaaccaaatccaatagtgttggtcgtgagggg 7307919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 25713291 - 25713356
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgagggg 465  Q
    ||||| |||||| ||||||||||||| |||| | ||||||||  |||||||| ||||| |||||||    
T  25713291 ttccgctatcgggccacccaccatttatgtccacgaaccaagcccaatagtgttggtcgtgagggg 25713356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 473
Target Start/End: Original strand, 369779 - 369839
Alignment:
Q  414 cacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgagggg-tgtgttaa 473  Q
    |||||||||||| |||| | ||||||||  |||||||||||||| ||||||| ||||||||    
T  369779 cacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgaggggatgtgttaa 369839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 5705 - 5640
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgagggg 465  Q
    ||||| |||||||||||||||||||| |||| | ||||||||  |||||||||||||| |||||||    
T  5705 ttccgctatcggaccacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggg 5640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 16239725 - 16239799
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||||||||||  ||||||||||||| |||| | |||||||| ||||||||| ||||| ||| ||||||||||||    
T  16239725 ttccgttatcgagccacccaccatttatgtccacgaaccaagctcaatagtgatggtcgtgagggggtgtgttaa 16239799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 20303250 - 20303176
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgag-gggtgtgttaa 473  Q
    ||||| |||||| ||||||||||||| |||| | ||||||||| ||| |||||||||| |||| |||||||||||    
T  20303250 ttccgctatcggtccacccaccatttatgtccacgaaccaagtccaacagtgctggtcgtgagcgggtgtgttaa 20303176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 473
Target Start/End: Original strand, 31317368 - 31317438
Alignment:
Q  404 gttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||||||| ||||||||||||| |||| | |||||||  ||||||||||||||| ||| ||||||||||||    
T  31317368 gttatcgggccacccaccatttatgtccacgaaccaaactcaatagtgctggtcgtgagggggtgtgttaa 31317438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 473
Target Start/End: Complemental strand, 19954397 - 19954330
Alignment:
Q  406 tatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgaggggtgtgttaa 473  Q
    |||| ||||||||||||||| |||| | ||||||||  ||||||| |||||| ||||||| |||||||    
T  19954397 tatctgaccacccaccatttatgtccacgaaccaagcccaatagtactggtcgtgaggggggtgttaa 19954330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 473
Target Start/End: Original strand, 4155457 - 4155531
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgag-gggtgtgttaa 473  Q
    ||||| |||||| ||||||||| ||| |||| | ||||||||  |||||||||||||| |||| |||||||||||    
T  4155457 ttccgctatcgggccacccaccgtttatgtcgacgaaccaagcccaatagtgctggtcgtgagagggtgtgttaa 4155531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 20327800 - 20327726
Alignment:
Q  400 ttccgttatcggaccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatgag-gggtgtgttaa 473  Q
    ||||| |||||| ||||||||||||| |||| | ||||||||  |||||||| ||||| |||| |||||||||||    
T  20327800 ttccgctatcgggccacccaccatttatgtccaggaaccaagcccaatagtgttggtcgtgagcgggtgtgttaa 20327726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 473
Target Start/End: Original strand, 34992753 - 34992813
Alignment:
Q  414 cacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  34992753 cacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 34992813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 473
Target Start/End: Original strand, 81987 - 82048
Alignment:
Q  413 ccacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||| |||||||| |||| ||||||||||  |||||||||||||| ||| ||||||||||||    
T  81987 ccacgcaccatttatgtccatgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 82048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 473
Target Start/End: Original strand, 2063 - 2123
Alignment:
Q  414 cacccaccatttgtgtctatgaaccaagttcaatagtgctggtcatga-ggggtgtgttaa 473  Q
    |||||||||||| |||| | ||||||||  |||||||||||||| ||| ||||||||||||    
T  2063 cacccaccatttatgtccacgaaccaagcccaatagtgctggtcgtgagggggtgtgttaa 2123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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