View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18522_high_35 (Length: 269)

Name: NF18522_high_35
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18522_high_35
NF18522_high_35
[»] chr8 (11 HSPs)
chr8 (13-269)||(3391342-3391598)
chr8 (13-269)||(3364308-3364564)
chr8 (13-268)||(3314998-3315253)
chr8 (32-269)||(3407148-3407385)
chr8 (200-269)||(3286508-3286577)
chr8 (200-269)||(31175986-31176055)
chr8 (200-262)||(3262620-3262682)
chr8 (200-269)||(3324993-3325062)
chr8 (200-269)||(7164645-7164714)
chr8 (209-269)||(3398522-3398582)
chr8 (202-269)||(3267193-3267260)
[»] chr5 (6 HSPs)
chr5 (16-269)||(15803050-15803303)
chr5 (209-269)||(12599054-12599114)
chr5 (209-269)||(20812416-20812476)
chr5 (209-269)||(20838771-20838831)
chr5 (207-267)||(8877750-8877810)
chr5 (200-265)||(30417963-30418028)
[»] scaffold0468 (1 HSPs)
scaffold0468 (183-269)||(6122-6208)
[»] chr3 (6 HSPs)
chr3 (183-269)||(6905782-6905868)
chr3 (200-269)||(32411076-32411145)
chr3 (207-267)||(47986752-47986812)
chr3 (207-267)||(47996039-47996099)
chr3 (207-267)||(48005326-48005386)
chr3 (207-267)||(48014611-48014671)
[»] chr6 (18 HSPs)
chr6 (207-267)||(5354494-5354554)
chr6 (207-267)||(5157508-5157568)
chr6 (207-262)||(5370717-5370772)
chr6 (207-266)||(5690039-5690098)
chr6 (207-267)||(5066574-5066634)
chr6 (207-267)||(5176880-5176940)
chr6 (207-267)||(5243793-5243853)
chr6 (207-267)||(5278707-5278767)
chr6 (207-267)||(5345002-5345062)
chr6 (207-267)||(5426051-5426111)
chr6 (207-266)||(5128297-5128356)
chr6 (207-267)||(5073788-5073848)
chr6 (207-267)||(5102494-5102554)
chr6 (207-266)||(5096850-5096909)
chr6 (215-266)||(5383468-5383519)
chr6 (206-269)||(5397089-5397152)
chr6 (207-269)||(5181807-5181869)
chr6 (210-260)||(31059813-31059863)
[»] chr4 (8 HSPs)
chr4 (207-269)||(4344785-4344847)
chr4 (210-269)||(4320502-4320561)
chr4 (207-269)||(4361216-4361278)
chr4 (211-263)||(6498410-6498462)
chr4 (211-265)||(6675846-6675900)
chr4 (207-269)||(4123819-4123881)
chr4 (211-265)||(6545332-6545386)
chr4 (215-265)||(6588084-6588134)
[»] chr7 (2 HSPs)
chr7 (207-267)||(36213709-36213769)
chr7 (169-267)||(8371621-8371719)
[»] scaffold0294 (1 HSPs)
scaffold0294 (207-266)||(8780-8839)
[»] chr2 (1 HSPs)
chr2 (178-267)||(14766918-14767007)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 3391342 - 3391598
Alignment:
Q  13 atcatcaagaaattttcggaattcttgtttcagttgaatctccgagtcacattgtaccgaaacacttctaagttttgaacagctgctaagtatctgtgat 112  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3391342 atcatcaagaaatcttctgaattcttgtttcagttgaatctctgagtcacattgtaccgaaacacttctaagttttgaacagctgctaagtatttgtgat 3391441  T
Q  113 tgatagactaaagccagattattgctctttatatctaaggaagcaagagactttgacatgccaccaaaagggggaatgtatggaaatgaattcattgttg 212  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||| | ||  |  |||||||||||||    
T  3391442 tgatagactaaagccagattattgctctctatatccaaggaagcaagagactttgacatgccaccaaaaggggaaatatgtgctacagaattcattgttg 3391541  T
Q  213 gtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    ||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||    
T  3391542 gtgacatccaagacctaatgagagaaggaaaaacatgatgtgataatccttcatatc 3391598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 3364564 - 3364308
Alignment:
Q  13 atcatcaagaaattttcggaattcttgtttcagttgaatctccgagtcacattgtaccgaaacacttctaagttttgaacagctgctaagtatctgtgat 112  Q
    ||||||||||||| ||| ||||||||| |||||||||||||| || ||||||||||||||||||||||||||| ||||||| ||| ||||||| ||||||    
T  3364564 atcatcaagaaatcttccgaattcttgcttcagttgaatctctgaatcacattgtaccgaaacacttctaagtcttgaacaactgttaagtatttgtgat 3364465  T
Q  113 tgatagactaaagccagattattgctctttatatctaaggaagcaagagactttgacatgccaccaaaagggggaatgtatggaaatgaattcattgttg 212  Q
    ||| |||| ||||||||||||||||| | |||||| ||||||  ||||||||||||||||||||||||||||||||||  ||| || |||||||||||||    
T  3364464 tgagagaccaaagccagattattgctatctatatccaaggaaaaaagagactttgacatgccaccaaaagggggaatgcgtggtaaggaattcattgttg 3364365  T
Q  213 gtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    |||| |||||||||||||||||||| |||||||||| | ||||||||||||||||||    
T  3364364 gtgatatccaagacctaatgagagaaggaaaaacatgatgtgataatccttcatatc 3364308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 3315253 - 3314998
Alignment:
Q  13 atcatcaagaaattttcggaattcttgtttcagttgaatctccgagtcacattgtaccgaaacacttctaagttttgaacagctgctaagtatctgtgat 112  Q
    ||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||  |||||    
T  3315253 atcatcaagaaatcttctgaattcttgtttcagttgaatctctgagtcacattgtactgaaacacttctaagttttgaatagctgctaagtattggtgat 3315154  T
Q  113 tgatagactaaagccagattattgctctttatatctaaggaagcaagagactttgacatgccaccaaaagggggaatgtatggaaatgaattcattgttg 212  Q
    |||| ||| ||| ||| |||  | || | || ||| ||| || |||||||| |||||||||||||||  |||||||| | ||  || ||||||||  |||    
T  3315153 tgatggaccaaacccaaatttctactatctacatccaagcaaacaagagacattgacatgccaccaacggggggaatatgtgctaaggaattcatgtttg 3315054  T
Q  213 gtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatat 268  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||    
T  3315053 gtgacatccaagaccaaatgatagaaggaaaaacatcacgtgataaaccttcatat 3314998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 32 - 269
Target Start/End: Original strand, 3407148 - 3407385
Alignment:
Q  32 aattcttgtttcagttgaatctccgagtcacattgtaccgaaacacttctaagttttgaacagctgctaagtatctgtgattgatagactaaagccagat 131  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||    
T  3407148 aattcttgtttaagttgaatctctgagtgacattgtaccgaaacacatctaagttttgaacagctgctaagtatcggtgattgatagaccaaacccagat 3407247  T
Q  132 tattgctctttatatctaaggaagcaagagactttgacatgccaccaaaagggggaatgtatggaaatgaattcattgttggtgacatccaagacctaat 231  Q
    |||  || |  ||||  |||||| |||||||| |||| || |||||||||| ||||||   ||  || || ||||||||||||||||||||||||| |||    
T  3407248 tatcactatcaatattcaaggaaacaagagacattgaaattccaccaaaagagggaatacgtgctaaggagttcattgttggtgacatccaagaccaaat 3407347  T
Q  232 gagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    || ||| ||||||||||||||||||||||||| |||||    
T  3407348 gatagaaggaaaaacatcacgtgataatccttgatatc 3407385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 3286508 - 3286577
Alignment:
Q  200 gaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  3286508 gaattcagtgttggtgacatccaagacctaatgagagattgaaaaacatcatgtgataatccttcatatc 3286577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 269
Target Start/End: Complemental strand, 31176055 - 31175986
Alignment:
Q  200 gaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    ||||| || ||||||||||||||||||| ||||||||| |||||||| |||| |||||||||||||||||    
T  31176055 gaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacgtcacatgataatccttcatatc 31175986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 3262620 - 3262682
Alignment:
Q  200 gaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatcct 262  Q
    |||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||    
T  3262620 gaattcatggttggtgacatccaagaccaaatgatagagggaaaaacatcacgtgaaaatcct 3262682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 3324993 - 3325062
Alignment:
Q  200 gaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    ||||||||  |||||||||||||||||| ||||| ||| |||||||||||  |||||| |||||||||||    
T  3324993 gaattcatgcttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgatagtccttcatatc 3325062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 7164645 - 7164714
Alignment:
Q  200 gaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    |||||||  ||||||||||||||||||| ||| ||||| |||||||||||||  ||||| ||||||||||    
T  7164645 gaattcaaggttggtgacatccaagaccaaataagagaaggaaaaacatcacaggataacccttcatatc 7164714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 3398522 - 3398582
Alignment:
Q  209 gttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    |||||||||||||| |||| ||||||||| ||||||||||||   |||||||||| |||||    
T  3398522 gttggtgacatccatgaccaaatgagagaaggaaaaacatcagacgataatcctttatatc 3398582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 3267193 - 3267260
Alignment:
Q  202 attcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    |||||||||||||||||||||||||  ||| | |||  ||||||||||   |||||||||||||||||    
T  3267193 attcattgttggtgacatccaagactgaataatagaatgaaaaacatcttctgataatccttcatatc 3267260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 15803303 - 15803050
Alignment:
Q  16 atcaagaaattttcggaattcttgtttcagttgaatctccgagtcacattgtaccgaaacacttctaagttttgaacagctgctaagtatctgtgattga 115  Q
    |||||||||| ||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| ||| ||||||| |||||||||    
T  15803303 atcaagaaatcttctgaattcttgtttcagttgaatctctgagtcacattgtactgaaacacttctaagtcttgaacaactgttaagtatttgtgattga 15803204  T
Q  116 tagactaaagccagattattgctctttatatctaaggaagcaagagactttgacatgccaccaaaagggggaatgtatggaaatgaattcattgttggtg 215  Q
     | || ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||    
T  15803203 gacaccaaatccagattattgctctctatatccaaggaagcaagagactttgacatgccaccaaaagggggaatgcatggtaaggaattcattgctggtg 15803104  T
Q  216 acatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    | |||||||||||||||||||| |||||||||||| |||||||||||| |||||    
T  15803103 atatccaagacctaatgagagaaggaaaaacatcatgtgataatcctttatatc 15803050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 209 - 269
Target Start/End: Original strand, 12599054 - 12599114
Alignment:
Q  209 gttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    ||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||    
T  12599054 gttggtgacatccaagaccaattgagagaaggaaaaacatcacgtgataatccttcatatc 12599114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 20812476 - 20812416
Alignment:
Q  209 gttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||    
T  20812476 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcgtatc 20812416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 20838831 - 20838771
Alignment:
Q  209 gttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    ||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||    
T  20838831 gttggtgacatccaagaccaaatgagagaaggaaaaacatcatgtgataatccttcatatc 20838771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 8877810 - 8877750
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||| || |||||||||||    
T  8877810 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgcgaaaatccttcata 8877750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 30418028 - 30417963
Alignment:
Q  200 gaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttca 265  Q
    ||||| ||||||||||||||||||||||  |||||| | ||||||||||||||||  |||||||||    
T  30418028 gaatttattgttggtgacatccaagaccgtatgagacaaggaaaaacatcacgtgcaaatccttca 30417963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 6122 - 6208
Alignment:
Q  183 ggggaatgtatggaaatgaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||| ||| || || |||||||||||||||||||||||||||||||    
T  6122 ggggaatatgtggcaatgaattcattgttggtgacatccaagaccaaataagggaaggaaaaacatcacgtgataatccttcatatc 6208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 6905782 - 6905868
Alignment:
Q  183 ggggaatgtatggaaatgaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    ||||||| ||||| || | |||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  6905782 ggggaatatatggcaagggattcattgttggtgacatccaagaccaaatgagagaaggaaaaatatcacgtgataatccttcatatc 6905868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 32411076 - 32411145
Alignment:
Q  200 gaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||| || ||| ||||||||||||||||||    
T  32411076 gaattcattgttggtgacatctaagaccaaatgagagagggaaatacttcatgtgataatccttcatatc 32411145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 47986752 - 47986812
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  47986752 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 47986812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 47996039 - 47996099
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  47996039 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 47996099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 48005326 - 48005386
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  48005326 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 48005386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 48014611 - 48014671
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  48014611 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 48014671  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 5354494 - 5354554
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  5354494 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgagaatccttcata 5354554  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 5157508 - 5157568
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||| || |||||||||||    
T  5157508 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgagaaaatccttcata 5157568  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 5370772 - 5370717
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatcct 262  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| |||| ||||||    
T  5370772 ttgttggtgacatccaagaccaaatgatagatggaaaaacatcatgtgaaaatcct 5370717  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 5690039 - 5690098
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcat 266  Q
    ||||||||||||||||||||| ||||| ||||||||| | ||||||||| ||||||||||    
T  5690039 ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcat 5690098  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 5066574 - 5066634
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    ||||||||||||||||||||  ||||| ||||||||| |||||||| || |||||||||||    
T  5066574 ttgttggtgacatccaagacaaaatgatagatggaaacacatcacgcgagaatccttcata 5066634  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 5176940 - 5176880
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    ||||||||||||||||||||| |||||  |||||||| | ||||||||| |||||||||||    
T  5176940 ttgttggtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcata 5176880  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 5243793 - 5243853
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    |||||||||||||||||||||  |||| ||||||||| ||||| ||||| |||||||||||    
T  5243793 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgaaaatccttcata 5243853  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 5278767 - 5278707
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    ||||||||||||||||||||| |||||  |||||||| | ||||||||| |||||||||||    
T  5278767 ttgttggtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcata 5278707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 5345062 - 5345002
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    |||||||||||||||||||||  |||| ||||||||| ||||| ||||| |||||||||||    
T  5345062 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcata 5345002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 5426111 - 5426051
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    ||||||||||||||||||||| |||||  | |||||| ||||||||||| |||||||||||    
T  5426111 ttgttggtgacatccaagaccaaatgatcgctggaaacacatcacgtgaaaatccttcata 5426051  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 5128297 - 5128356
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcat 266  Q
    |||||||||||||||||||||  |||| ||||||||| ||||||| ||| ||||||||||    
T  5128297 ttgttggtgacatccaagaccagatgatagatggaaacacatcacttgaaaatccttcat 5128356  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 5073788 - 5073848
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    |||| |||||||||||||||| |||||  ||||| || ||||||||||| |||||||||||    
T  5073788 ttgtcggtgacatccaagaccaaatgatcgatgggaacacatcacgtgagaatccttcata 5073848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 5102494 - 5102554
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    |||||||||||||||||||||  |||| ||||||||| |||||| |||| | |||||||||    
T  5102494 ttgttggtgacatccaagaccagatgatagatggaaacacatcatgtgaaagtccttcata 5102554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 5096909 - 5096850
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcat 266  Q
    |||||||||||| ||||||||  |||| ||| ||||| ||||||||||| ||||||||||    
T  5096909 ttgttggtgacaaccaagaccagatgatagacggaaacacatcacgtgaaaatccttcat 5096850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 5383519 - 5383468
Alignment:
Q  215 gacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcat 266  Q
    |||||||||||| ||||||  |||||||| ||||||||||| ||||||||||    
T  5383519 gacatccaagacttaatgatggatggaaacacatcacgtgagaatccttcat 5383468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 5397152 - 5397089
Alignment:
Q  206 attgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    |||||||||||||||||||||  ||||| || |||||| || |||| ||| |||||||||||||    
T  5397152 attgttggtgacatccaagacgaaatgatagctggaaacacttcacatgaaaatccttcatatc 5397089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 5181807 - 5181869
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    |||| |||||||||||||||| |||||  | |||||| |||||| |||| |||||||||||||    
T  5181807 ttgtcggtgacatccaagaccaaatgatcgctggaaacacatcatgtgagaatccttcatatc 5181869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 31059813 - 31059863
Alignment:
Q  210 ttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatc 260  Q
    ||||||||||| |||||| ||||||||| ||||||||||||| ||| ||||    
T  31059813 ttggtgacatcaaagaccaaatgagagaaggaaaaacatcacatgacaatc 31059863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 4344847 - 4344785
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    ||||||||||||||||||||| ||||| ||| ||||| ||||||||||| |||||||||||||    
T  4344847 ttgttggtgacatccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcatatc 4344785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 4320502 - 4320561
Alignment:
Q  210 ttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    |||||||||||||||||| ||||| ||| ||||| ||||||||||| |||||||||||||    
T  4320502 ttggtgacatccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcatatc 4320561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 4361278 - 4361216
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    ||||||||||||||||||||  ||||| ||| ||||| ||||||||||| |||||||||||||    
T  4361278 ttgttggtgacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatc 4361216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 6498410 - 6498462
Alignment:
Q  211 tggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatcctt 263  Q
    ||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||    
T  6498410 tggtgacatccaagaccgaatgagagaaggaaatacatcacgtgaaaatcctt 6498462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 6675900 - 6675846
Alignment:
Q  211 tggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttca 265  Q
    |||||||||||||||| |||||||||| ||||| |||||| |||| |||||||||    
T  6675900 tggtgacatccaagacttaatgagagaaggaaatacatcaagtgaaaatccttca 6675846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 4123819 - 4123881
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcatatc 269  Q
    |||||||| |||||||||||  ||||| ||| ||||| |||||||| || |||||||||||||    
T  4123819 ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgagagaatccttcatatc 4123881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 6545332 - 6545386
Alignment:
Q  211 tggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttca 265  Q
    |||||||| |||||||| ||||||||| || || ||||||||||| |||||||||    
T  6545332 tggtgacagccaagaccgaatgagagaagggaatacatcacgtgaaaatccttca 6545386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 6588084 - 6588134
Alignment:
Q  215 gacatccaagacctaatgagagatggaaaaacatcacgtgataatccttca 265  Q
    ||||||||||||| ||||||||| || || ||||||||||| |||||||||    
T  6588084 gacatccaagaccgaatgagagaagggaatacatcacgtgaaaatccttca 6588134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 207 - 267
Target Start/End: Original strand, 36213709 - 36213769
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||| |||| |||||||||||    
T  36213709 ttgttggtgacatccaagaccaaatgatagatggaaacacatcatgtgagaatccttcata 36213769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 267
Target Start/End: Original strand, 8371621 - 8371719
Alignment:
Q  169 catgccaccaaaagggggaatgtatggaaatgaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    |||||| ||||||||||||||   ||| || ||||| || || || ||||||||| ||| |||||| || |||||||| ||| ||||||||||||||||    
T  8371621 catgcctccaaaagggggaatacgtggtaacgaatttatagtaggagacatccaaaaccgaatgagtgaaggaaaaacttcatgtgataatccttcata 8371719  T

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Target: scaffold0294 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 8780 - 8839
Alignment:
Q  207 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcat 266  Q
    ||||||| |||||||||||| |||||| ||||||||| ||||||||||| ||||||||||    
T  8780 ttgttggagacatccaagacttaatgatagatggaaacacatcacgtgagaatccttcat 8839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 14766918 - 14767007
Alignment:
Q  178 aaaagggggaatgtatggaaatgaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 267  Q
    |||||||||||||  ||| || ||| ||||||| || ||||||||| ||| |||||| |||||||||| |||| | ||||||||||||||    
T  14766918 aaaagggggaatgcgtggtaaggaagtcattgtaggagacatccaaaaccgaatgagtgatggaaaaatatcatgcgataatccttcata 14767007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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