View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18522_high_39 (Length: 262)
Name: NF18522_high_39
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_high_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 52720598 - 52720361
Alignment:
| Q |
19 |
ctcgttcactgaaagatcatcaaaaagtgccaagttaatacctatcatatattaaaattatgtgtacataatacattgtgatgattctgtataatttcat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
52720598 |
ctcgttcactgaaagatcatcaaaaagtgccaagttaatacctatcatatattaaaattatgtgtacataatacattgtgatgattctgtataatgtaat |
52720499 |
T |
|
| Q |
119 |
aatgtagtgtttagttcatacttatgatgaagggagctgccttccatcctccagttgttcttttatcagcaatcctaccatgccgatccacgcggccatt |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52720498 |
aatgtagtatttagttcatacttatgatgaagggagctgccttccatcctccagttgttcttttatcagcaatcctaccatgccgatccacgcggccatt |
52720399 |
T |
|
| Q |
219 |
gcttaccaagctactcgattccatttcctcctgttttt |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52720398 |
gcttaccaagctactcgattccatttcctcctgttttt |
52720361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 52711719 - 52711472
Alignment:
| Q |
19 |
ctcgttcactgaaagatcatcaaaaagtgccaagtta------atacctatcatatattaaaattat-----gtgtacataatacattgtgatgattctg |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||| || | |||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
52711719 |
ctcgttcactgaaagatcatcaaaaagggccaagttattgctaatacataccgtatattaaaactatactatgtgtacataatacattgtgatgattctg |
52711620 |
T |
|
| Q |
108 |
tataatttcataatgtagtgtttagttcatacttatgatgaagggagctgccttccatcctccagttgttcttttatcagcaatcctaccatgccgatcc |
207 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
52711619 |
tataatttaataatgtagtatttagttcatacttatgatgaagggagctgccttccatcctccggttgttcttttattagcaatcctaccttgccgatcc |
52711520 |
T |
|
| Q |
208 |
acgcggccattgcttaccaagctactcgattccatttcctcctgtttt |
255 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52711519 |
acacggccattgcttaccaagctactcgattccatttcctcctgtttt |
52711472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 254
Target Start/End: Complemental strand, 52697945 - 52697813
Alignment:
| Q |
122 |
gtagtgtttagttcatacttatgatgaagggagctgccttccatcctccagttgttcttttatcagcaatcctaccatgccgatccacgcggccattgct |
221 |
Q |
| |
|
||||| |||| ||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || |||| || |
|
|
| T |
52697945 |
gtagtatttatttcatacatatgatatagggagctgccttccatcctccagttgttcgtttatcagcaatcctaccatgcctatccacacgatcattact |
52697846 |
T |
|
| Q |
222 |
taccaagctactcgattccatttcctcctgttt |
254 |
Q |
| |
|
||||||||| || | ||||||||||||||||| |
|
|
| T |
52697845 |
caccaagctattcaaatccatttcctcctgttt |
52697813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University