View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18522_high_46 (Length: 244)

Name: NF18522_high_46
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18522_high_46
NF18522_high_46
[»] chr5 (12 HSPs)
chr5 (22-236)||(32837541-32837755)
chr5 (122-239)||(21333066-21333183)
chr5 (122-239)||(21336082-21336199)
chr5 (133-235)||(22937326-22937428)
chr5 (133-236)||(28441522-28441625)
chr5 (133-204)||(26547705-26547776)
chr5 (133-204)||(26551264-26551335)
chr5 (134-202)||(3194814-3194883)
chr5 (147-239)||(14376194-14376286)
chr5 (134-202)||(34653187-34653256)
chr5 (153-237)||(43491408-43491492)
chr5 (133-175)||(2452953-2452995)
[»] chr6 (7 HSPs)
chr6 (40-229)||(2371886-2372072)
chr6 (133-237)||(5738471-5738575)
chr6 (133-239)||(1126112-1126220)
chr6 (132-239)||(23388484-23388591)
chr6 (133-200)||(11410379-11410446)
chr6 (133-204)||(28848474-28848545)
chr6 (132-239)||(9953599-9953703)
[»] chr8 (11 HSPs)
chr8 (77-239)||(45155654-45155817)
chr8 (132-239)||(25595042-25595149)
chr8 (133-204)||(5963868-5963939)
chr8 (132-239)||(18721666-18721773)
chr8 (132-239)||(25591863-25591965)
chr8 (133-200)||(452767-452834)
chr8 (132-242)||(23613168-23613278)
chr8 (152-239)||(10663546-10663634)
chr8 (133-239)||(14421372-14421479)
chr8 (133-205)||(18696359-18696431)
chr8 (126-184)||(31984603-31984661)
[»] chr7 (11 HSPs)
chr7 (122-239)||(26557107-26557225)
chr7 (122-192)||(8276610-8276680)
chr7 (133-204)||(11825791-11825862)
chr7 (133-204)||(8397471-8397541)
chr7 (133-238)||(10431936-10432041)
chr7 (133-235)||(4542610-4542713)
chr7 (133-235)||(4546489-4546590)
chr7 (201-239)||(13450165-13450203)
chr7 (205-239)||(13809902-13809936)
chr7 (205-242)||(17730505-17730542)
chr7 (136-204)||(22256875-22256944)
[»] scaffold0381 (1 HSPs)
scaffold0381 (133-237)||(5786-5890)
[»] chr4 (14 HSPs)
chr4 (133-239)||(27013894-27014000)
chr4 (133-239)||(12237903-12238009)
chr4 (138-230)||(5670198-5670290)
chr4 (133-235)||(37103603-37103706)
chr4 (138-230)||(5672517-5672609)
chr4 (133-237)||(5681060-5681163)
chr4 (134-204)||(18859391-18859461)
chr4 (133-239)||(19859905-19860013)
chr4 (147-202)||(11703020-11703075)
chr4 (133-179)||(40617139-40617185)
chr4 (140-180)||(7642770-7642810)
chr4 (133-184)||(19864926-19864977)
chr4 (147-202)||(33400754-33400808)
chr4 (133-202)||(10385579-10385648)
[»] chr2 (16 HSPs)
chr2 (132-239)||(26365545-26365653)
chr2 (133-239)||(38005566-38005674)
chr2 (133-200)||(29435365-29435432)
chr2 (133-202)||(4577466-4577535)
chr2 (133-239)||(25873788-25873895)
chr2 (133-203)||(10600578-10600648)
chr2 (133-205)||(15704403-15704475)
chr2 (152-239)||(29440156-29440243)
chr2 (133-192)||(15719670-15719729)
chr2 (136-202)||(1503866-1503931)
chr2 (134-202)||(38325984-38326053)
chr2 (134-202)||(38326706-38326775)
chr2 (136-202)||(1507070-1507135)
chr2 (205-239)||(6826458-6826492)
chr2 (205-239)||(24234781-24234815)
chr2 (133-203)||(25870421-25870491)
[»] scaffold0080 (1 HSPs)
scaffold0080 (132-239)||(26819-26926)
[»] chr3 (15 HSPs)
chr3 (132-204)||(30158472-30158544)
chr3 (133-227)||(10884575-10884669)
chr3 (132-204)||(36037396-36037468)
chr3 (132-203)||(17532041-17532112)
chr3 (133-231)||(9392453-9392551)
chr3 (153-202)||(55032259-55032308)
chr3 (133-204)||(2280049-2280120)
chr3 (136-202)||(9154434-9154500)
chr3 (134-179)||(44508425-44508470)
chr3 (179-239)||(6435149-6435209)
chr3 (147-239)||(8461859-8461950)
chr3 (135-199)||(26551211-26551275)
chr3 (179-239)||(28265643-28265703)
chr3 (133-204)||(10107004-10107075)
chr3 (153-202)||(55035268-55035317)
[»] chr1 (5 HSPs)
chr1 (133-228)||(1950850-1950945)
chr1 (133-204)||(37641479-37641550)
chr1 (133-200)||(49715985-49716052)
chr1 (133-200)||(49719468-49719535)
chr1 (152-239)||(2793880-2793967)
[»] scaffold0035 (1 HSPs)
scaffold0035 (133-235)||(62148-62250)
[»] scaffold0360 (1 HSPs)
scaffold0360 (133-202)||(2095-2164)
[»] scaffold0062 (2 HSPs)
scaffold0062 (133-205)||(53315-53387)
scaffold0062 (133-192)||(68227-68286)
[»] scaffold0962 (1 HSPs)
scaffold0962 (166-239)||(3666-3739)
[»] scaffold0214 (3 HSPs)
scaffold0214 (133-202)||(13222-13291)
scaffold0214 (133-202)||(19672-19741)
scaffold0214 (133-202)||(27238-27307)
[»] scaffold0014 (1 HSPs)
scaffold0014 (126-184)||(226961-227019)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 32837541 - 32837755
Alignment:
Q  22 ggcttggcacaaagctactttcagcaatcacgttttcggcagagaggaaggaagcatatgggaaaagaacatcaatcgtagtgattgagaagtaaatgaa 121  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  32837541 ggcttggcacaaagcgactttcagcaatcacgttttcggcagagaggaaggaagcatatgggaaaagaacatcaaccgtagtgattgagaagtaattgaa 32837640  T
Q  122 gagcaagcccacaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgag 221  Q
    |||||||||  |||| |||||| | |  || ||||||||||||| |||||||||||||||||||||||||| ||||||||||  ||||||||||||| ||    
T  32837641 gagcaagccggcaactacggaattctgacggtttattttctttactatgttgtttatttcttttatcatgtctagctaattttcagagattaagtctaag 32837740  T
Q  222 atgattctgtgtaac 236  Q
    |||||||||||||||    
T  32837741 atgattctgtgtaac 32837755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 21333183 - 21333066
Alignment:
Q  122 gagcaagcccacaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgag 221  Q
    |||||||||  || |||||||||| ||||| ||||||||||||| ||||||||||||| ||||||| |||| ||||||||||  ||||||||||||||||    
T  21333183 gagcaagccggcagcgacggaactctatcggtttattttctttactatgttgtttattccttttattatgtctagctaattttcagagattaagtctgag 21333084  T
Q  222 atgattctgtgtaaccct 239  Q
    ||||||||||||||||||    
T  21333083 atgattctgtgtaaccct 21333066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 21336199 - 21336082
Alignment:
Q  122 gagcaagcccacaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgag 221  Q
    |||||||||  || |||||||||| ||||| ||||||||||||| ||||||||||||| ||||||| |||| ||||||||||  ||||||||||||||||    
T  21336199 gagcaagccggcagcgacggaactctatcggtttattttctttactatgttgtttattccttttattatgtctagctaattttcagagattaagtctgag 21336100  T
Q  222 atgattctgtgtaaccct 239  Q
    ||||||||||||||||||    
T  21336099 atgattctgtgtaaccct 21336082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 22937428 - 22937326
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtg 232  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||  ||| ||||||| ||||||||||||   ||||| ||||||||||||| ||||    
T  22937428 caacgacggaactctatcggtttattttctttactatgttgtttattattttaatcatgtctagctaatttctcttgattaggtctgagatgattttgtg 22937329  T
Q  233 taa 235  Q
    |||    
T  22937328 taa 22937326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 28441625 - 28441522
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtg 232  Q
    ||||||||||||| ||||| ||||||||||||| || |||||||||||||||  |||||| |||||||||||    ||||| ||||||||||| |||||     
T  28441625 caacgacggaactctatcggtttattttctttactacgttgtttatttctttattcatgtctagctaatttccttggattaggtctgagatgactctgta 28441526  T
Q  233 taac 236  Q
    ||||    
T  28441525 taac 28441522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 26547705 - 26547776
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 204  Q
    ||||||||||||| ||||| |||||| | ||||||||||||||||||  ||| ||||||| |||||||||||    
T  26547705 caacgacggaactctatcggtttattgtttttattatgttgtttattcgtttgatcatgtctagctaatttc 26547776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 26551264 - 26551335
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 204  Q
    ||||||||||||| ||||| |||||| | ||||||||||||||||||  ||| ||||||| |||||||||||    
T  26551264 caacgacggaactctatcggtttattgtttttattatgttgtttattcgtttgatcatgtctagctaatttc 26551335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 3194814 - 3194883
Alignment:
Q  134 aacgacggaactttatcgatttattttctttattatgttgtttatt-tcttttatcatgtatagctaatt 202  Q
    |||||||||| | ||||| ||||||||||||| ||||||||||||| | ||| |||||||||||||||||    
T  3194814 aacgacggaattctatcggtttattttctttactatgttgtttattctttttaatcatgtatagctaatt 3194883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 14376286 - 14376194
Alignment:
Q  147 tatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagatta-agtctgagatgattctgtgtaaccct 239  Q
    ||||| ||||||||||||| ||||||||||||| |||||||||||  ||||||| ||||   |||||  ||||||||||||||| |||||||||    
T  14376286 tatcggtttattttctttactatgttgtttattccttttatcatgcctagctaa-ttctcttgattagggtctgagatgattctttgtaaccct 14376194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 34653256 - 34653187
Alignment:
Q  134 aacgacggaactttatcgatttattttctttattatgttgtttatt-tcttttatcatgtatagctaatt 202  Q
    |||||||||| | ||||| ||||||||||||| ||||||||||||| | ||| ||||||| |||||||||    
T  34653256 aacgacggaattctatcggtttattttctttactatgttgtttattctttttaatcatgtctagctaatt 34653187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 237
Target Start/End: Original strand, 43491408 - 43491492
Alignment:
Q  153 tttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtgtaacc 237  Q
    ||||||||||||| |||||||||||| | ||| | ||||| |||||||||||    |||||  ||||| ||||||||||||||||    
T  43491408 tttattttctttactatgttgtttatgtatttaaccatgtctagctaatttccttggattagatctgaaatgattctgtgtaacc 43491492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 2452953 - 2452995
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtt 175  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||    
T  2452953 caacgacggaactctatggatttattttctttactatgttgtt 2452995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 40 - 229
Target Start/End: Original strand, 2371886 - 2372072
Alignment:
Q  40 tttcagcaatcacgttttcggcagagaggaaggaagcatatgggaaaagaacatcaatcgtagtgattgagaagtaaatgaagagcaagcccacaacgac 139  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||| |||||   ||||||    
T  2371886 tttcggcaatcacgttttcggcagagaggaaggaagcatatggaaaaagaacatcaaccgtagtgattgtgaagtaactgaagagtaagccggtaacgac 2371985  T
Q  140 ggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattct 229  Q
     ||||| ||||| |||||||| |||| |||| ||||||||||||||   |||| ||||||||||| |||||||  || || |||||||||    
T  2371986 agaactctatcggtttattttttttactatgctgtttatttctttt---atgtctagctaatttccagagatttggtatgggatgattct 2372072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 5738575 - 5738471
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtg 232  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||  ||| ||||||| |||||||||||    ||||| ||||||||||||||| ||    
T  5738575 caacgacggaactctatcggtttattttctttactatgttgtttattattttaatcatgtctagctaatttcctttgattaggtctgagatgattctttg 5738476  T
Q  233 taacc 237  Q
    |||||    
T  5738475 taacc 5738471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 1126220 - 1126112
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaattt--ctagagattaagtctgagatgattctg 230  Q
    ||||||||||||| ||||| |||||| | |||| ||||||||||||| ||||||  |||| ||||||||||   |||||| || ||||||||||||||||    
T  1126220 caacgacggaactctatcggtttattgtttttactatgttgtttattccttttactatgtctagctaattttcttagagagtaggtctgagatgattctg 1126121  T
Q  231 tgtaaccct 239  Q
    |||||||||    
T  1126120 tgtaaccct 1126112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 23388591 - 23388484
Alignment:
Q  132 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgt 231  Q
    ||||||||| |||| ||||| ||||||||||||| |||||||||||| | ||| | ||||| |||||||||||    ||||| ||| |||||||||||||    
T  23388591 acaacgacgaaactctatcggtttattttctttactatgttgtttatgtatttaaccatgtctagctaatttcctttgattaggtccgagatgattctgt 23388492  T
Q  232 gtaaccct 239  Q
    ||||||||    
T  23388491 gtaaccct 23388484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 11410379 - 11410446
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaa 200  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||| ||| ||||||| |||||||    
T  11410379 caacgacggaactctatcggtttattttctttactatgttgtttatttatttgatcatgtctagctaa 11410446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 28848474 - 28848545
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 204  Q
    |||||| ||||||  |||||||||||||||||| |||||||||||| | ||| ||||||| ||| |||||||    
T  28848474 caacgatggaactccatcgatttattttctttactatgttgtttatgtatttgatcatgtctagttaatttc 28848545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 9953599 - 9953703
Alignment:
Q  132 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgt 231  Q
    ||||||||| |||| |||||  ||||||| ||||||||||||||||| | ||| | ||||| |||||||||||    ||||| ||||||   ||||||||    
T  9953599 acaacgacgaaactctatcggcttattttttttattatgttgtttatgtatttaaccatgtctagctaatttcctttgattaggtctga---gattctgt 9953695  T
Q  232 gtaaccct 239  Q
    ||||||||    
T  9953696 gtaaccct 9953703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 77 - 239
Target Start/End: Complemental strand, 45155817 - 45155654
Alignment:
Q  77 atatgggaaaagaacatcaatcgtagtgattgagaagtaaatgaagagcaagcccacaacgacggaactttatcgatttattttctttattatgttgttt 176  Q
    ||||||||||||||||| ||  |||| ||||||||||||| ||| |||||||||  ||||||||||||| |||   ||||||||||||| ||||||||||    
T  45155817 atatgggaaaagaacatgaacagtagcgattgagaagtaattgaggagcaagccggcaacgacggaactctatatgtttattttctttactatgttgttt 45155718  T
Q  177 atttcttttatcatgtatagctaatttctagagattaagtctgagatgattctg-tgtaaccct 239  Q
    |||||||| ||||||| |||||||||| ||||||||| |||||||||||||||| |||||||||    
T  45155717 atttctttaatcatgtctagctaatttttagagattaggtctgagatgattctgatgtaaccct 45155654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 25595149 - 25595042
Alignment:
Q  132 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgt 231  Q
    ||||||||| |||| ||||| |||||||| |||| |||||||||||| | ||| ||||||| ||||||||||| |  ||||| ||||||||| |||||||    
T  25595149 acaacgacgaaactctatcggtttattttttttactatgttgtttatgtatttaatcatgtctagctaatttccattgattaggtctgagattattctgt 25595050  T
Q  232 gtaaccct 239  Q
    ||||||||    
T  25595049 gtaaccct 25595042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 5963868 - 5963939
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 204  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||  ||| ||||||| |||||||||||    
T  5963868 caacgacggaactctatcggtttattttctttattatgttgtttattcgtttgatcatgtctagctaatttc 5963939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 18721773 - 18721666
Alignment:
Q  132 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgt 231  Q
    ||||||||| |||| ||||| ||||||||||||| |||||||||||| | ||| | ||||| |||||||||||    ||||| ||||||||||||||| |    
T  18721773 acaacgacgaaactctatcggtttattttctttactatgttgtttatgtatttaaccatgtctagctaatttcctttgattaggtctgagatgattctat 18721674  T
Q  232 gtaaccct 239  Q
    ||||||||    
T  18721673 gtaaccct 18721666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 25591965 - 25591863
Alignment:
Q  132 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgt 231  Q
    ||||||||| |||| ||||| ||||||||||||| |||||||||||| | ||| ||||||| |||||||||||      ||||||||||||| |||||||    
T  25591965 acaacgacgaaactctatcggtttattttctttactatgttgtttatgtatttaatcatgtctagctaatttc-----cttaagtctgagattattctgt 25591871  T
Q  232 gtaaccct 239  Q
    ||||||||    
T  25591870 gtaaccct 25591863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 452767 - 452834
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaa 200  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||  ||| ||||||| |||||||    
T  452767 caacgacagaactctatcgatttattttctttattatgttgtttattaatttgatcatgtctagctaa 452834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 242
Target Start/End: Original strand, 23613168 - 23613278
Alignment:
Q  132 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgt 231  Q
    ||||||||| |||| ||||| ||||||||||||| |||||| ||||| | ||| | ||||| |||||||||||    ||||| ||||||||||||| | |    
T  23613168 acaacgacgaaactctatcggtttattttctttactatgttatttatgtatttaaccatgtctagctaatttcctttgattaggtctgagatgattttat 23613267  T
Q  232 gtaaccctgat 242  Q
    |||||||||||    
T  23613268 gtaaccctgat 23613278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 10663546 - 10663634
Alignment:
Q  152 atttattttctttatt-atgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtgtaaccct 239  Q
    |||||||||||||||| |||||||||||| |||| ||||||| ||||||| |||    ||||| ||||||||||| |||||||||||||    
T  10663546 atttattttctttatttatgttgtttattcctttgatcatgtctagctaaattcctttgattaggtctgagatgaatctgtgtaaccct 10663634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 14421372 - 14421479
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgttt-atttcttttatcatgtatagctaattt-ctagagattaagtctgagatgattctg 230  Q
    ||||||||||| | ||||| ||||||||||||| |||||| ||| || | ||| | ||||| |||||||||| || | ||||| ||||||||||||||||    
T  14421372 caacgacggaattctatcggtttattttctttactatgtttttttatgtatttaaccatgtttagctaatttacttg-gattaggtctgagatgattctg 14421470  T
Q  231 tgtaaccct 239  Q
    |||||||||    
T  14421471 tgtaaccct 14421479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 18696431 - 18696359
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttct 205  Q
    |||||||| |||| ||||| ||||||||||||| |||||||||||||| ||| ||||||| ||| ||| ||||    
T  18696431 caacgacgaaactctatcggtttattttctttactatgttgtttatttatttgatcatgtctagttaaattct 18696359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 31984603 - 31984661
Alignment:
Q  126 aagcccacaacgacggaactttatcgatttattttctttattatgttgtttatttcttt 184  Q
    ||||| ||||||||| | || ||||| ||||||||||||| ||||||||||||| ||||    
T  31984603 aagccgacaacgacgaagctctatcggtttattttctttactatgttgtttattccttt 31984661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 26557107 - 26557225
Alignment:
Q  122 gagcaagcccacaacgacggaactttatcgatttattttcttt-attatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctga 220  Q
    |||||||||  ||||||||||||| ||||  |||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  26557107 gagcaagccggcaacgacggaactctatcagtttatttttttttattatgttgtttatttcttttatcatgtctagctaatttccagagattaagtctga 26557206  T
Q  221 gatgattctgtgtaaccct 239  Q
    |||||||||||||||||||    
T  26557207 gatgattctgtgtaaccct 26557225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 8276610 - 8276680
Alignment:
Q  122 gagcaagcccacaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgt 192  Q
    |||||||||  ||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||    
T  8276610 gagcaagccggcaacgacggaactctatcagtttattttctttattatgttgtttatttcttttatcatgt 8276680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 11825862 - 11825791
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 204  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||  ||| ||||||| |||||||||||    
T  11825862 caacgacggaactctatcggtttattttctttattatgttgtttattcgtttgatcatgtctagctaatttc 11825791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 8397471 - 8397541
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 204  Q
    ||||||||||||| || || ||||||||||||||||||||||||||| |||| ||||||| |||||||||||    
T  8397471 caacgacggaactcta-cggtttattttctttattatgttgtttattcctttgatcatgtctagctaatttc 8397541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 10431936 - 10432041
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtg 232  Q
    ||||||||||||| ||  | ||||||||||||| || |||||||||||||||  |||||| |||||||||||    ||||| ||| ||||||| ||||||    
T  10431936 caacgacggaactctaatggtttattttctttactaggttgtttatttctttattcatgtctagctaatttccttggattaggtccgagatgactctgtg 10432035  T
Q  233 taaccc 238  Q
    ||||||    
T  10432036 taaccc 10432041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 4542610 - 4542713
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaa-tttctagagattaagtctgagatgattctgt 231  Q
    ||||||| ||||||||||| |||| ||||||  ||||||||||| ||| ||| || |||| ||| ||| ||||||||| ||| ||||||||||||||| |    
T  4542610 caacgactgaactttatcggtttaatttcttctttatgttgtttttttatttgattatgtctagttaattttctagaggttaggtctgagatgattcttt 4542709  T
Q  232 gtaa 235  Q
    ||||    
T  4542710 gtaa 4542713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 4546489 - 4546590
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtg 232  Q
    ||||||| ||||||||||| |||| ||||||  ||||||||||| ||| ||| || |||| |||| ||||| |  |||||| ||||||||||||||| ||    
T  4546489 caacgactgaactttatcggtttaatttcttctttatgttgtttttttatttgattatgtctagcaaattt-tctagattaggtctgagatgattctttg 4546587  T
Q  233 taa 235  Q
    |||    
T  4546588 taa 4546590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 13450203 - 13450165
Alignment:
Q  201 tttctagagattaagtctgagatgattctgtgtaaccct 239  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  13450203 tttctagagattaggtctgagatgattctttgtaaccct 13450165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 13809936 - 13809902
Alignment:
Q  205 tagagattaagtctgagatgattctgtgtaaccct 239  Q
    ||||||||| |||||||||||||||||||||||||    
T  13809936 tagagattaggtctgagatgattctgtgtaaccct 13809902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 17730505 - 17730542
Alignment:
Q  205 tagagattaagtctgagatgattctgtgtaaccctgat 242  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  17730505 tagagattaggtctgagatgattctttgtaaccctgat 17730542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 22256875 - 22256944
Alignment:
Q  136 cgacggaactttatcgatttattttctttattatgttg-tttatttcttttatcatgtatagctaatttc 204  Q
    ||||| |||| ||||| ||||||||||||||||||||| ||| ||| ||| ||||||| ||| |||||||    
T  22256875 cgacgaaactctatcggtttattttctttattatgttgttttttttatttaatcatgtctagttaatttc 22256944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 5890 - 5786
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtg 232  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||||||    ||||| ||||||||||||||| ||    
T  5890 caacgacggaactctatcgatttattttctttactatgttgtttattattttaatcatgtctagctaatttcctttgattaggtctgagatgattctttg 5791  T
Q  233 taacc 237  Q
    |||||    
T  5790 taacc 5786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 27013894 - 27014000
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtg 232  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||||||    ||||| ||||||||||||  ||||    
T  27013894 caacgacggaactctatcgatttattttctttactatgttgtttattattttaatcatgtctagctaatttcctttgattaggtctgagatgatcttgtg 27013993  T
Q  233 taaccct 239  Q
    |||||||    
T  27013994 taaccct 27014000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 12237903 - 12238009
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtg 232  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||  ||  ||||||| ||||||||||||     ||| ||||||||||||||| ||    
T  12237903 caacgacggaattttatcggtttattttctttattatgttgtttattatttcaatcatgtttagctaatttctttttgttaggtctgagatgattctttg 12238002  T
Q  233 taaccct 239  Q
    |||||||    
T  12238003 taaccct 12238009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 5670198 - 5670290
Alignment:
Q  138 acggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctg 230  Q
    |||||||| ||||| ||||||||||||  |||||||||||||||||| ||||||| |||||||||||    ||||| ||||||||||||||||    
T  5670198 acggaactctatcggtttattttctttgctatgttgtttatttctttaatcatgtctagctaatttcctttgattaggtctgagatgattctg 5670290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 37103706 - 37103603
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaa-tttctagagattaagtctgagatgattctgt 231  Q
    ||||| || |||| ||||| |||||||||||||||||||||||||||  ||||||||||| ||||||| |||||   |||||| |||||||||||||| |    
T  37103706 caacggcgaaactctatcggtttattttctttattatgttgtttattctttttatcatgtctagctaattttcttttgattaaatctgagatgattcttt 37103607  T
Q  232 gtaa 235  Q
    ||||    
T  37103606 gtaa 37103603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 5672517 - 5672609
Alignment:
Q  138 acggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctg 230  Q
    |||||||| ||||| ||||||||||||  |||||||||||||||||| ||||||| ||||||||||     ||||| ||||||||||||||||    
T  5672517 acggaactctatcggtttattttctttgctatgttgtttatttctttaatcatgtctagctaattttctttgattaggtctgagatgattctg 5672609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 5681060 - 5681163
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtg 232  Q
    ||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||  |||||| || |||| ||||  || ||| ||||||||||||||| ||    
T  5681060 caacgacggaactctatcggtttattttctttactatattgtttatttctttattcatgtctaactaa-ttctttaggttaggtctgagatgattctttg 5681158  T
Q  233 taacc 237  Q
    |||||    
T  5681159 taacc 5681163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 18859391 - 18859461
Alignment:
Q  134 aacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 204  Q
    |||||||||||| |||| ||||||| |||||| |||||||||||||  ||| ||||||| |||||||||||    
T  18859391 aacgacggaactctatcaatttattgtctttagtatgttgtttattcgtttgatcatgtttagctaatttc 18859461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 19860013 - 19859905
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaa-tttct-agagattaagtctgagatgattctg 230  Q
    |||||||||||||| |||| ||||||||||||| ||| ||||||| | |||| |  |||| ||||||| ||||| |||||||| || ||||||| ||||     
T  19860013 caacgacggaacttcatcggtttattttctttactatattgtttagtcctttaactatgtctagctaattttctaagagattaggtttgagatgtttctt 19859914  T
Q  231 tgtaaccct 239  Q
    |||||||||    
T  19859913 tgtaaccct 19859905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 11703075 - 11703020
Alignment:
Q  147 tatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 202  Q
    ||||| ||||||||||||| |||||||||||||| ||| ||||||| |||||||||    
T  11703075 tatcggtttattttctttactatgttgtttatttatttaatcatgtctagctaatt 11703020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 40617185 - 40617139
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatt 179  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||    
T  40617185 caacgacggaactctatcggtttattttctttactatgttgtttatt 40617139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 7642810 - 7642770
Alignment:
Q  140 ggaactttatcgatttattttctttattatgttgtttattt 180  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  7642810 ggaactttatcgatttattttttttactatgttgtttattt 7642770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 19864977 - 19864926
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttt 184  Q
    ||||||||||||| ||||| ||||||||||||| ||| ||||||||| ||||    
T  19864977 caacgacggaactctatcggtttattttctttactatcttgtttattccttt 19864926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 33400808 - 33400754
Alignment:
Q  147 tatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 202  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||||| || ||||||    
T  33400808 tatcgatttattttctttactatgttgttta-ttctttaatcatgtctatctaatt 33400754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 10385579 - 10385648
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 202  Q
    ||||||||||||| |||  ||||||||| |||| |||||||||| |||||||  |||||| ||| |||||    
T  10385579 caacgacggaactctatgaatttattttttttactatgttgtttgtttctttattcatgtctagttaatt 10385648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 26365545 - 26365653
Alignment:
Q  132 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaa-tttctagagattaagtctgagatgattctg 230  Q
    ||||||| | |||| ||||| |||||||| |||||||||||||||||| |||||||||||| ||||||| |||||   |||||||||||||||||||||     
T  26365545 acaacgatgaaactctatcggtttattttttttattatgttgtttattccttttatcatgtctagctaattttcttttgattaagtctgagatgattctt 26365644  T
Q  231 tgtaaccct 239  Q
    | |||||||    
T  26365645 tctaaccct 26365653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 38005674 - 38005566
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaattt--ctagagattaagtctgagatgattctg 230  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||||||| |||| |  |||| ||||||||||   ||||||| | ||||||||| |||||     
T  38005674 caacgacggaactctatcggtttattttctttactatgttgtttattcctttaactatgtctagctaattttcttagagatgaggtctgagatcattctt 38005575  T
Q  231 tgtaaccct 239  Q
    |||||||||    
T  38005574 tgtaaccct 38005566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 29435365 - 29435432
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaa 200  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||| ||| ||||||| |||||||    
T  29435365 caacgacggaactctatcggtttattttctttactatgttgtttatttatttgatcatgtctagctaa 29435432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 4577466 - 4577535
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 202  Q
    |||||||| | || ||||||||||||||||||| |||||||||||||||||| || |||| |||||||||    
T  4577466 caacgacgaagctctatcgatttattttctttactatgttgtttatttctttaattatgtctagctaatt 4577535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 25873788 - 25873895
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaattt-ctagagattaagtctgagatgattctgt 231  Q
    ||||||| ||||||||||| |||| ||||||  ||||||||||| ||| ||| || |||| |||||||||| |||||  ||| ||||||| ||||||| |    
T  25873788 caacgactgaactttatcggtttaatttcttctttatgttgtttgtttatttgattatgtctagctaatttcctagatgttaggtctgaggtgattcttt 25873887  T
Q  232 gtaaccct 239  Q
    ||||||||    
T  25873888 gtaaccct 25873895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 10600578 - 10600648
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaattt 203  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||| ||  ||| ||||||| ||||||||||    
T  10600578 caacgacggaactttatcggtttattttctttactatattgtttgttattttaatcatgtctagctaattt 10600648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 15704475 - 15704403
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttct 205  Q
    |||||||| |||| ||||| ||||||||||||| |||||||||||||| ||| ||||||| ||| ||| ||||    
T  15704475 caacgacgaaactctatcggtttattttctttactatgttgtttatttatttgatcatgtctagttaaattct 15704403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 29440156 - 29440243
Alignment:
Q  152 atttattttcttta-ttatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtgtaaccct 239  Q
    |||||||||||||| |||||||||||||| |||| ||||||| ||||||| |||    ||||| ||||||||||| |||||||||||||    
T  29440156 atttattttctttacttatgttgtttatt-ctttgatcatgtctagctaaattcctttgattaggtctgagatgaatctgtgtaaccct 29440243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 15719729 - 15719670
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgt 192  Q
    |||||||| |||| ||||| ||||||||||||| |||||||||||||| ||| |||||||    
T  15719729 caacgacgaaactctatcggtttattttctttactatgttgtttatttatttgatcatgt 15719670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 1503931 - 1503866
Alignment:
Q  136 cgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 202  Q
    ||||| |||| ||||||||||||||||| | |||||||||||||| ||| ||||||| |||||||||    
T  1503931 cgacgaaactctatcgatttattttctt-actatgttgtttatttatttaatcatgtctagctaatt 1503866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 38325984 - 38326053
Alignment:
Q  134 aacgacggaactttatcgatttattttctttattatgttgtttatt-tcttttatcatgtatagctaatt 202  Q
    |||||||||| | ||||||||||||||||||| || |||||||||| | ||| ||||||| |||||||||    
T  38325984 aacgacggaattctatcgatttattttctttactacgttgtttattctttttaatcatgtctagctaatt 38326053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 38326775 - 38326706
Alignment:
Q  134 aacgacggaactttatcgatttattttctttattatgttgtttatt-tcttttatcatgtatagctaatt 202  Q
    |||||||||| | ||||||||||||||||||| || |||||||||| | ||| ||||||| |||||||||    
T  38326775 aacgacggaattctatcgatttattttctttactacgttgtttattctttttaatcatgtctagctaatt 38326706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 1507135 - 1507070
Alignment:
Q  136 cgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 202  Q
    ||||| |||| ||||| ||||||||||| | |||||||||||||| ||| ||||||| |||||||||    
T  1507135 cgacgaaactctatcggtttattttctt-actatgttgtttatttatttaatcatgtctagctaatt 1507070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 239
Target Start/End: Original strand, 6826458 - 6826492
Alignment:
Q  205 tagagattaagtctgagatgattctgtgtaaccct 239  Q
    ||||||||||||||||||||||||| |||||||||    
T  6826458 tagagattaagtctgagatgattctttgtaaccct 6826492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 239
Target Start/End: Original strand, 24234781 - 24234815
Alignment:
Q  205 tagagattaagtctgagatgattctgtgtaaccct 239  Q
    ||||||||||||||||||||||||| |||||||||    
T  24234781 tagagattaagtctgagatgattctttgtaaccct 24234815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 25870421 - 25870491
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaattt 203  Q
    ||||||| ||||||||||| |||| ||||||  ||||||||||| ||| ||| || |||| ||||||||||    
T  25870421 caacgaccgaactttatcggtttaatttcttctttatgttgtttgtttatttgattatgtctagctaattt 25870491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 26819 - 26926
Alignment:
Q  132 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgt 231  Q
    ||||||||| |||| ||||| |||||||  |||| |||||||||||| ||||| ||||||| ||| |||||||    ||||| |||||||||||||||||    
T  26819 acaacgacgaaactctatcggtttatttcttttaatatgttgtttatctctttgatcatgtctaggtaatttcatttgattaggtctgagatgattctgt 26918  T
Q  232 gtaaccct 239  Q
    ||||||||    
T  26919 gtaaccct 26926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 30158544 - 30158472
Alignment:
Q  132 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 204  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||||||  ||| ||||||| |||||||||||    
T  30158544 acaacgatggaactctatcggtttattttctttattatgttgtttattcgtttgatcatgtctagctaatttc 30158472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 10884575 - 10884669
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgatt 227  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| |||||| || |||| ||| |||||||    ||||| |||||||||||||    
T  10884575 caacgacggaactttattggtttattttctttactatgttgtttaattctttgattatgtttagttaatttcctttgattaggtctgagatgatt 10884669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 36037468 - 36037396
Alignment:
Q  132 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 204  Q
    |||||| || |||| |||||||||||||||||||||||||||||||||  ||  ||||||| |||||||||||    
T  36037468 acaacgtcgaaactctatcgatttattttctttattatgttgtttattcattgaatcatgtgtagctaatttc 36037396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 17532112 - 17532041
Alignment:
Q  132 acaacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaattt 203  Q
    |||||||||||||| | ||| ||||||||||||| ||||||| ||||| |||| ||||||| ||||||||||    
T  17532112 acaacgacggaactctttcgctttattttctttactatgttgcttattgctttaatcatgtctagctaattt 17532041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 9392453 - 9392551
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgt 231  Q
    ||||||||||| | ||||| |||||||||||  |||||||||||  || ||| ||||||| |||||| |||||   ||||| |||||||||||||||||    
T  9392453 caacgacggaattctatcggtttattttcttctttatgttgtttgcttatttgatcatgtctagctagtttcttttgattaggtctgagatgattctgt 9392551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 55032308 - 55032259
Alignment:
Q  153 tttattttctttattatgttgtttatttcttttatcatgtatagctaatt 202  Q
    ||||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  55032308 tttattttctttactatgttgtttattccttttatcatgtctagctaatt 55032259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 2280120 - 2280049
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 204  Q
    ||||||||||| | ||||| |||||||||||||  ||||||||| |||||||  |||||| |||||||||||    
T  2280120 caacgacggaattctatcggtttattttctttacaatgttgtttgtttctttattcatgtctagctaatttc 2280049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 9154434 - 9154500
Alignment:
Q  136 cgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 202  Q
    |||||||||||||||  |||||||| |||| |||||||||||| | ||| ||||||| |||||||||    
T  9154434 cgacggaactttatctgtttattttttttactatgttgtttatgtatttaatcatgtctagctaatt 9154500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 44508425 - 44508470
Alignment:
Q  134 aacgacggaactttatcgatttattttctttattatgttgtttatt 179  Q
    |||||||||| | ||||||||||||||||||| |||||||||||||    
T  44508425 aacgacggaattctatcgatttattttctttactatgttgtttatt 44508470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 6435209 - 6435149
Alignment:
Q  179 ttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtgtaaccct 239  Q
    |||||||||||||| ||||||| ||||   ||||| ||||||||||| |||||||||||||    
T  6435209 ttcttttatcatgtctagctaaattcttttgattaggtctgagatgaatctgtgtaaccct 6435149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 8461950 - 8461859
Alignment:
Q  147 tatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtgtaaccct 239  Q
    |||||||||||||||||| ||||||| |||  || ||| ||||||| |||||| ||| |   ||||| ||||||||||||| |||||||||||    
T  8461950 tatcgatttattttcttt-ttatgttatttgcttatttgatcatgtctagctagtttattttgattaggtctgagatgattttgtgtaaccct 8461859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 26551211 - 26551275
Alignment:
Q  135 acgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagcta 199  Q
    ||||||||||  | || ||||| |||||||| |||||||||||||||||| ||||||| ||||||    
T  26551211 acgacggaacactttcaatttaatttctttactatgttgtttatttctttcatcatgtctagcta 26551275  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 28265643 - 28265703
Alignment:
Q  179 ttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtgtaaccct 239  Q
    |||||||||||||| ||||||| ||||   ||||| ||||||||||| |||||||||||||    
T  28265643 ttcttttatcatgtctagctaaattcttttgattaggtctgagatgaatctgtgtaaccct 28265703  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 10107075 - 10107004
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 204  Q
    |||||||||||   ||| | ||||||||||||| ||||||||||| |||||| || |||| |||||||||||    
T  10107075 caacgacggaatcctattggtttattttctttactatgttgtttaattctttgattatgtctagctaatttc 10107004  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 55035317 - 55035268
Alignment:
Q  153 tttattttctttattatgttgtttatttcttttatcatgtatagctaatt 202  Q
    ||||||||||||| || | |||||||| |||||||||||| |||||||||    
T  55035317 tttattttctttactacgctgtttattccttttatcatgtctagctaatt 55035268  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 1950945 - 1950850
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattc 228  Q
    ||||||||||||| ||| | ||||||||||||| ||||||||||| |||||| || |||| |||||||||||    ||||| ||||||||||||||    
T  1950945 caacgacggaactctattggtttattttctttactatgttgtttaattctttgattatgtctagctaatttcctttgattaggtctgagatgattc 1950850  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 37641479 - 37641550
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttc 204  Q
    ||||||| ||||| ||||| |||||||||||||||||||||||||||  ||| ||||||| |||||||||||    
T  37641479 caacgacagaactctatcggtttattttctttattatgttgtttattcgtttgatcatgtctagctaatttc 37641550  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 49715985 - 49716052
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaa 200  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||| ||| ||||||| |||||||    
T  49715985 caacgacggaactctatcggtttattttctttactatgttgtttatttatttgatcatgtctagctaa 49716052  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 49719468 - 49719535
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaa 200  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||| ||| ||||||| |||||||    
T  49719468 caacgacggaactctatcggtttattttctttactatgttgtttatttatttgatcatgtctagctaa 49719535  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 2793880 - 2793967
Alignment:
Q  152 atttattttcttta-ttatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtgtaaccct 239  Q
    |||||||||||||| |||||||||||||| |||| ||||||| ||||||| |||    ||||| ||||||||||| |||||||||||||    
T  2793880 atttattttctttacttatgttgtttatt-ctttgatcatgtctagctaaattcctttgattaggtctgagatgaatctgtgtaaccct 2793967  T

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Target: scaffold0035 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 62148 - 62250
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtg 232  Q
    ||||||||||||| |||||  ||||||||||||  ||||||||||||  ||| ||||||| |||||||||||    ||||| ||||||||||||||| ||    
T  62148 caacgacggaactctatcgggttattttctttaccatgttgtttattattttaatcatgtctagctaatttcctttgattaggtctgagatgattctttg 62247  T
Q  233 taa 235  Q
    |||    
T  62248 taa 62250  T

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Target: scaffold0360 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 2095 - 2164
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 202  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| |||||||  | |||| |||||||||    
T  2095 caacgacggaactctatcggtttattttctttattatgttgtttgtttctttattgatgtctagctaatt 2164  T

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Target: scaffold0062 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 53387 - 53315
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatttct 205  Q
    |||||||| |||| ||||| ||||||||||||| |||||||||||||| ||| ||||||| ||| ||| ||||    
T  53387 caacgacgaaactctatcggtttattttctttactatgttgtttatttatttgatcatgtctagttaaattct 53315  T

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Target: scaffold0062; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 68286 - 68227
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgt 192  Q
    |||||||| |||| ||||| ||||||||||||| |||||||||||||| ||| |||||||    
T  68286 caacgacgaaactctatcggtttattttctttactatgttgtttatttatttgatcatgt 68227  T

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Target: scaffold0962 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0962
Description:

Target: scaffold0962; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 3739 - 3666
Alignment:
Q  166 ttatgttgtttatttcttttatcatgtatagctaatttctagagattaagtctgagatgattctgtgtaaccct 239  Q
    |||||||||||  || ||| ||||||| ||||||||||||   ||||| ||||||||||||| |||||||||||    
T  3739 ttatgttgtttgcttatttgatcatgtctagctaatttcttttgattaggtctgagatgattttgtgtaaccct 3666  T

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Target: scaffold0214 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 13222 - 13291
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 202  Q
    |||||||| | || ||||| ||||||||||||| |||||||||||||| ||| || |||| |||||||||    
T  13222 caacgacgaagctctatcggtttattttctttactatgttgtttatttttttaattatgtctagctaatt 13291  T

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Target: scaffold0214; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 19672 - 19741
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 202  Q
    |||||||| | || ||||| ||||||||||||| ||||||||||| |||||| || |||| |||||||||    
T  19672 caacgacgaagctctatcggtttattttctttactatgttgtttaattctttaattatgtctagctaatt 19741  T

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Target: scaffold0214; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 27238 - 27307
Alignment:
Q  133 caacgacggaactttatcgatttattttctttattatgttgtttatttcttttatcatgtatagctaatt 202  Q
    |||||||| | || ||||| ||||||||||||| |||||||||||||| ||| || |||| |||||||||    
T  27238 caacgacgaagctctatcggtttattttctttactatgttgtttatttttttaattatgtctagctaatt 27307  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 226961 - 227019
Alignment:
Q  126 aagcccacaacgacggaactttatcgatttattttctttattatgttgtttatttcttt 184  Q
    ||||| ||||||||| | || ||||| ||||||||||||| ||||||||||||| ||||    
T  226961 aagccgacaacgacgaagctctatcggtttattttctttactatgttgtttattccttt 227019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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