View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_high_51 (Length: 238)
Name: NF18522_high_51
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_high_51 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 31485336 - 31485125
Alignment:
| Q |
1 |
ctcgtctttttacaaggacgaatggtgctcaccttcaccaattaccaaacgatgcattgattacaatttcaaaggtgagactctattgctaaatgtgtag |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
31485336 |
ctcgtctttttacaaggacgagtggtgctcaccttcaccaattaccaaacgatgcattgattacaatttcaaaggt--------attgcaaaatgtgtag |
31485245 |
T |
|
| Q |
101 |
cctcnnnnnnncttgtcctatttctcttggaaaatccaaaacctatgtggaccaatcattttgacatcagggttaaggacttagcatcacttgtttggtt |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31485244 |
cctctttttttcttgtcctatttctcttggaaaatccaaaacctatgtggaccaatcattttgacatcagggttaaggacttggcatcacttgtttggtt |
31485145 |
T |
|
| Q |
201 |
ttacactgttacctcaaaac |
220 |
Q |
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|| ||||||||||||||||| |
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| T |
31485144 |
ttgcactgttacctcaaaac |
31485125 |
T |
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