View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18522_high_52 (Length: 236)

Name: NF18522_high_52
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18522_high_52
NF18522_high_52
[»] chr5 (7 HSPs)
chr5 (1-221)||(1758036-1758256)
chr5 (1-221)||(29568361-29568590)
chr5 (2-221)||(29168141-29168363)
chr5 (52-221)||(29425232-29425404)
chr5 (47-205)||(29569708-29569866)
chr5 (46-205)||(27918583-27918742)
chr5 (1-40)||(29569859-29569898)
[»] chr4 (4 HSPs)
chr4 (1-226)||(27521322-27521547)
chr4 (1-221)||(27461888-27462108)
chr4 (1-221)||(27482027-27482247)
chr4 (1-221)||(18985988-18986208)
[»] chr3 (1 HSPs)
chr3 (1-217)||(25518369-25518588)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 1758036 - 1758256
Alignment:
Q  1 tcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1758036 tcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgccgttcaccatcatcatcatct 1758135  T
Q  101 gctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1758136 gctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgcgggaatg 1758235  T
Q  201 ctcttagccgctgtgtctctg 221  Q
    |||||||||||||||||||||    
T  1758236 ctcttagccgctgtgtctctg 1758256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 29568590 - 29568361
Alignment:
Q  1 tcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatca---------ctctcacaaaaactctgtcaaacgctgttcaccatca 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||         | |||||||||||||| ||||||||  ||||||||||    
T  29568590 tcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcatcatcatcacactcacaaaaactctttcaaacgccattcaccatca 29568491  T
Q  92 tcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctcc 191  Q
    ||||| ||||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29568490 tcatcttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctcc 29568391  T
Q  192 gcgggaatgctcttagccgctgtgtctctg 221  Q
    | ||||||||||||||||||||||||||||    
T  29568390 gtgggaatgctcttagccgctgtgtctctg 29568361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 29168141 - 29168363
Alignment:
Q  2 cacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatca---ctctcacaaaaactctgtcaaacgctgttcaccatcatcatcat 98  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||   | ||||||| ||||||||||||||  |||||||||||||||| |    
T  29168141 cacaaacagaaacaaagcatgattattccaacatcatcaatgcttcatcatcatcacactcacaacaactctgtcaaacgtcgttcaccatcatcatctt 29168240  T
Q  99 ctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaa 198  Q
    |||||||||||| ||||  ||| |||||||||||  |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||    
T  29168241 ctgctcaccaactatcatccaataagcattctttcaacgcaagcaatctcacccgtaatggcttctccaccattacacttcctttcagtctccgtgggaa 29168340  T
Q  199 tgctcttagccgctgtgtctctg 221  Q
    |||||||||| ||||||||||||    
T  29168341 tgctcttagctgctgtgtctctg 29168363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 52 - 221
Target Start/End: Original strand, 29425232 - 29425404
Alignment:
Q  52 tcactctcacaaaaactctgtcaaacgctgttcacc---atcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctc 148  Q
    |||| ||||||| ||||||||||||||| |||||||   ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  29425232 tcacactcacaacaactctgtcaaacgccgttcaccaccatcatcatcatctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctc 29425331  T
Q  149 acccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctg 221  Q
    |  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29425332 atgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccgctgtgtctctg 29425404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 47 - 205
Target Start/End: Complemental strand, 29569866 - 29569708
Alignment:
Q  47 catcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatc 146  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||||||||||||||  |||||||||||||    
T  29569866 catcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcatctgctcaccaactatcatccaagaagcattcttccgacgcaagcaatc 29569767  T
Q  147 tcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctctt 205  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||    
T  29569766 tcacccgtaatggcttctccgccattacacttcctttcagtctccgtggcaatgctctt 29569708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 46 - 205
Target Start/End: Original strand, 27918583 - 27918742
Alignment:
Q  46 tcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaat 145  Q
    |||||||||| ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| ||||  |||||||||||||| || ||||||||||    
T  27918583 tcatcatcacactcacaacaactctgtcaaacgcagttcaccatcatcatcttctgctcaccaactatcatccaagaagcattcttctggcgcaagcaat 27918682  T
Q  146 ctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctctt 205  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||    
T  27918683 ctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggcaacgctctt 27918742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29569898 - 29569859
Alignment:
Q  1 tcacaaacagaaacaatccatgattattccaacatcatca 40  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  29569898 tcacaaacacaaacaatccatgattattccaacatcatca 29569859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 27521547 - 27521322
Alignment:
Q  1 tcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||    
T  27521547 tcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcatct 27521448  T
Q  101 gctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatg 200  Q
    || ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27521447 gcccaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatg 27521348  T
Q  201 ctcttagccgctgtgtctctgctcct 226  Q
    ||||||||||||||||||||| ||||    
T  27521347 ctcttagccgctgtgtctctgatcct 27521322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27461888 - 27462108
Alignment:
Q  1 tcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||    
T  27461888 tcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcacactcacaacaacactgtcaaacgccgttcaccatcatcatcatct 27461987  T
Q  101 gctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatg 200  Q
      |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  27461988 tatcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgtggaaatg 27462087  T
Q  201 ctcttagccgctgtgtctctg 221  Q
    |||||||||||||||||||||    
T  27462088 ctcttagccgctgtgtctctg 27462108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27482027 - 27482247
Alignment:
Q  1 tcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||    
T  27482027 tcacaaacagaaacaatccatgattattccaacatcatcaatgcctcatcatcacactcacaacaacactgtcaaacgccgttcaccatcatcatcatct 27482126  T
Q  101 gctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatg 200  Q
      |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27482127 tatcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacaattcctttcagtctccgcgggaatg 27482226  T
Q  201 ctcttagccgctgtgtctctg 221  Q
    |||||||||||||||||||||    
T  27482227 ctcttagccgctgtgtctctg 27482247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18985988 - 18986208
Alignment:
Q  1 tcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  18985988 tcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcaccctcacaacaacactgtcaaactctgttcaccatcatcatcatct 18986087  T
Q  101 gctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatg 200  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||     
T  18986088 gctcaccaaccgtcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccattacactttctttcagtctccgtgggaata 18986187  T
Q  201 ctcttagccgctgtgtctctg 221  Q
    |||||||||||||||||||||    
T  18986188 ctcttagccgctgtgtctctg 18986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 25518369 - 25518588
Alignment:
Q  1 tcacaaacagaaacaatccatgattattccaacatcatcaatgctt---catcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatca 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||| ||||||||||||||| ||||||||||||||||     
T  25518369 tcacaaacagaaacaatccatgattattccaacatcatcaatgcttggtcatcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatct 25518468  T
Q  98 tctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcggga 197  Q
    ||| ||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || |    
T  25518469 tctcctcaccaaccatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtcttcgtggta 25518568  T
Q  198 atgctcttagccgctgtgtc 217  Q
    |||||||| || ||||||||    
T  25518569 atgctcttcgctgctgtgtc 25518588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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