View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_high_56 (Length: 223)
Name: NF18522_high_56
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_high_56 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 19469736 - 19469942
Alignment:
| Q |
1 |
atgttttagcaacaacaacctggaagagggatgactatgttcaaccagaagaagcttagggttatgctttgtataagactatgattttggtcaaggactg |
100 |
Q |
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| T |
19469736 |
atgttttagcaacaacaacctggaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtataagactatgattttggtcaaggactg |
19469835 |
T |
|
| Q |
101 |
ctgttttcgcatagtgggatttgagtgataatgaagggttactgaagaagatcatcagtgctggagaagaacctggaacttatctagggaatattattag |
200 |
Q |
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||||||||||| ||||| |||| |||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
19469836 |
ctgttttcgcacagtggaatttcagtgataatgaagggttagtgaagaagatcattagtgctgctgaagaacctggaacttatctagagaatattattag |
19469935 |
T |
|
| Q |
201 |
atgtttt |
207 |
Q |
| |
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||||||| |
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|
| T |
19469936 |
atgtttt |
19469942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 47865582 - 47865376
Alignment:
| Q |
1 |
atgttttagcaacaacaacctggaagagggatgactatgttcaaccagaagaagcttagggttatgctttgtataagactatgattttggtcaaggactg |
100 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47865582 |
atgttttagcaacgacaacctgaaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtacaagactatgattttggtcaaggactg |
47865483 |
T |
|
| Q |
101 |
ctgttttcgcatagtgggatttgagtgataatgaagggttactgaagaagatcatcagtgctggagaagaacctggaacttatctagggaatattattag |
200 |
Q |
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||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47865482 |
ctgttttcgcacagtggagtttgagtgataatgaagggttagtgaagaagatcattagtgctggtgaagaacctggaacttatctagggaatattattag |
47865383 |
T |
|
| Q |
201 |
atgtttt |
207 |
Q |
| |
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||||||| |
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|
| T |
47865382 |
atgtttt |
47865376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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