View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_high_9 (Length: 413)
Name: NF18522_high_9
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 400
Target Start/End: Original strand, 12241878 - 12242247
Alignment:
| Q |
15 |
ttattaatatatttcttgaaaagaccacatgtgttggtgga-tattagatacatgttctatatgaaatgtctgtggacataaaatatttatgagggttga |
113 |
Q |
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| T |
12241878 |
ttattaatatatttcttgaaaagaccacatatgttggaggaatatcagatacatgttctatataaaatgtctgtggacataaaatatttatgagtgttga |
12241977 |
T |
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| Q |
114 |
cttgacttatatgctatttgttgtccaaatttagaaattgttcccatagtctccaaaaattataacgtttatagtatttttctcttgacgaatacttgat |
213 |
Q |
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| T |
12241978 |
cttgacttatatgctatttgttgtccaattttagaaatggttcccata---------aaatat-----ttgtagtatttttctcttgacgaatacttgat |
12242063 |
T |
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| Q |
214 |
tgtctcttaagaaggggtcaaccattgtgtttccaaggaacaaggggacttcttgatttttattacaaaaatcatccaaaattgatcaaagtttatagta |
313 |
Q |
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| T |
12242064 |
tgtctgttaagaaggggtcaaccattgtgtttccaaggaacaaggggacttcttgatttttattacaaaaatcatccaaaattgatcaaagttta---ta |
12242160 |
T |
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| Q |
314 |
atatattagtgcgaatgcaaatcaaaagggaaattcttattcaacagtattgaatttaataataataaaaacataccacacgtaaat |
400 |
Q |
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| T |
12242161 |
atatattagtgcgaatgcaaatcaaaagggaaattcttattcaacagtattggatttaataataattaaaacataccacacgtaaat |
12242247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 261
Target Start/End: Original strand, 12236272 - 12236343
Alignment:
| Q |
190 |
tttttctcttgacgaatacttgattgtctcttaagaaggggtcaaccattgtgtttccaaggaacaagggga |
261 |
Q |
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| T |
12236272 |
tttttctcttgacgcatccctgattgtctcttaagaatgggtcaaccattaagtttcccaggaacaagggga |
12236343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 12249673 - 12249747
Alignment:
| Q |
185 |
tagtatttttctcttgacgaatacttgattgtctcttaagaaggggtcaaccattgtgtttccaaggaacaaggg |
259 |
Q |
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| T |
12249673 |
tagtatgtttctcttgacgatttcctaattgtctcctaataaggggtcaaccactgtgtttccaaggaacaaggg |
12249747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 12227879 - 12227942
Alignment:
| Q |
187 |
gtatttttctcttgacgaatacttgattgtctcttaagaaggggtcaaccattgtgtttccaaggaa |
253 |
Q |
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| T |
12227879 |
gtatttttctcttgacgaatccatgattgtctctt---aaggggtcaaccactgtgtttccaaggaa |
12227942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 12236439 - 12236491
Alignment:
| Q |
253 |
acaaggggacttcttgatttttattacaaaaatcatccaaaattgatcaaagt |
305 |
Q |
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| T |
12236439 |
acaagggaacttcttgatttttataacaaaaatcatccaaagttgatcaaagt |
12236491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 253
Target Start/End: Original strand, 12232910 - 12232991
Alignment:
| Q |
169 |
aaaattataacgtttatagtatttttctcttgacgaatacttgattgtctcttaagaaggggtcaaccattgtgtttccaaggaa |
253 |
Q |
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| T |
12232910 |
aaaattacaacatttccagtatttttctcttgacgaatccctaattgtctctt---aaggggtcaaccactgtgtttccaaggaa |
12232991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 253
Target Start/End: Original strand, 39114541 - 39114622
Alignment:
| Q |
169 |
aaaattataacgtttatagtatttttctcttgacgaatacttgattgtctcttaagaaggggtcaaccattgtgtttccaaggaa |
253 |
Q |
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| T |
39114541 |
aaaattacaacctttccagtatttttctcttgacaaatccctgatcgtctcttaag---gggtcaaccattgtgtttccaaggaa |
39114622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 31946880 - 31946831
Alignment:
| Q |
313 |
aatatattagtgcgaatgcaaatcaaaagggaaattcttattcaacagta |
362 |
Q |
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| T |
31946880 |
aatatattggtgcaattgcaaatcaaaaggaaaattcttattcaacagta |
31946831 |
T |
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