View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_10 (Length: 428)
Name: NF18522_low_10
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 1438915 - 1439316
Alignment:
| Q |
18 |
atatcataactcccttggttgcagtcaaatatattgccggtccatcctaggtcctccacatggcagagataaaacattttgaagctcgaagccagcattt |
117 |
Q |
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| T |
1438915 |
atatcataactcccttggttgcagtcaaatatattgccggtccatcctaggtcctccacatggcagagataaaacattttgaagctcgaagccagcattt |
1439014 |
T |
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| Q |
118 |
gatcctggaagggctaaaaatccctattcgggagtcttctggttcatcatggcaatataaacagtgcaaagtacagcaataatcaccacaactatcgccg |
217 |
Q |
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| T |
1439015 |
gatcctggaagggctaaaaatccctattcgggagtcttctggttcatcatggcaatataaacagtgcaaagtacagcaataatcaccacaactatcgccg |
1439114 |
T |
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| Q |
218 |
agctatcagaaccagaagaacctgacccaacatttgctcaagtaaacgtaag-nnnnnnnnntctttattgatgtgttattcttcaaaggattgcataga |
316 |
Q |
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| T |
1439115 |
agctatcagaaccagaagaacctgacccaacatttgctcaagtaaacgtaagaaaaaaaaaatctttattgatgtgttattcttcaaaggattgcataga |
1439214 |
T |
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| Q |
317 |
aattttctccaactgtagtggccaatcttctccaagttgctgtggatttagctccatcgcaactttaaaatcatgcaaagatactgaaaactggggtctg |
416 |
Q |
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| T |
1439215 |
aattttctccaactgtagtggccaatcttctccaagttgctgtggatttagctccatcgcaactttaaaatcatgcaaagatactgaaaactggggtctg |
1439314 |
T |
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| Q |
417 |
tg |
418 |
Q |
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| T |
1439315 |
tg |
1439316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 286 - 418
Target Start/End: Complemental strand, 1450985 - 1450853
Alignment:
| Q |
286 |
tgatgtgttattcttcaaaggattgcatagaaattttctccaactgtagtggccaatcttctccaagttgctgtggatttagctccatcgcaactttaaa |
385 |
Q |
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|||| ||||||| ||||| |||||||| |||||||||||| | || ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1450985 |
tgatctgttatttctcaaaagattgcatcgaaattttctccgattgcagtggccaatcttctccaagttgctttggatttagctccatcgcaactttaaa |
1450886 |
T |
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| Q |
386 |
atcatgcaaagatactgaaaactggggtctgtg |
418 |
Q |
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| T |
1450885 |
atcatgcaaagataccgagaactgagatctgtg |
1450853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 1451168 - 1451093
Alignment:
| Q |
87 |
taaaacattttgaagctcgaagccagcatttgatcctggaagggctaaaaatccctattcgggagtcttctggttc |
162 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||| |||| || || ||||||| |||||||| |
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| T |
1451168 |
taaaacatttgaaagctcgaaaccagcatttgatcctggaagggctagaaattcccgtttgggagtcatctggttc |
1451093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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