View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18522_low_11 (Length: 428)
Name: NF18522_low_11
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 412
Target Start/End: Complemental strand, 23995060 - 23994664
Alignment:
| Q |
17 |
tcaatctcatcatcaccatcatgtaagcattaagttatcataaa-gaagagaaaaagagaaaagacataaacttgcagaactttataaaatttattattg |
115 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23995060 |
tcaatcttatcatcagcatcatgtaagcattaagttatcataaaagaagagaaaaagagaaatgacataaacttgcagaactttataaaatttattattg |
23994961 |
T |
|
| Q |
116 |
aaaaataaattacaagatcataatctcggggactagaccaaaacccaaagaaacacttgaacaagtacaaaagaactgtctcattaaaaacaataccaga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23994960 |
aaaaataaattacaagatcataatctcggggattagaccaaaacccaaagaaacacttgaacaagtacaaaagaactatctcattaaaaacaataccaga |
23994861 |
T |
|
| Q |
216 |
agaatccaaatggatcggatccatggtaaagtaaaaatgagttcagttcattattaaaataaaagttacaagccaaaagaaaagcttaacgatcaatgtg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23994860 |
agaatccaaatggatcggatccatggtaaagtaaaaatgagttcagttcatgattaaaataaaagttacaagccaaaagaaaagcttaacgatcaatgtg |
23994761 |
T |
|
| Q |
316 |
aggtaaattgatgtaggaaaactcatgcagaaatatcaatcaatcctccacagatttgagcttaaaattacaattcatgtgagccataattatttgt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23994760 |
aggtaaattgatgtaggaaaactcatgcagaaatatcaatcaatcctccacagatttgagcttaaaattacaattcatgtgagccataattatttgt |
23994664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University