View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_15 (Length: 408)
Name: NF18522_low_15
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 30152818 - 30153191
Alignment:
| Q |
19 |
ccatgatccttcatctgcattaattagaagtttattcttcatttggttagcattaaagtttgtacttcgaccattgtagttttactaatttccttttttg |
118 |
Q |
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| T |
30152818 |
ccatgatccttcatctgcattaattagaagtttattcttcatttggttagcattaaagtttgtacttcgaccattgtagttttactaatttccttttttg |
30152917 |
T |
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| Q |
119 |
ttcatctttaaaggactttgaaggaatctatatcacgttttagannnnnnnnnccctaaaaattttcattcaattcaattcttcaaccattcatatagct |
218 |
Q |
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| T |
30152918 |
ttcatctttcaaggactttgaaggaatctatatcacgttttagatttttttt-ccctaaaaattttcattcaattcaattcttcaaccattcatatagct |
30153016 |
T |
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| Q |
219 |
aaatggcttcaagcagtggaacttggtttctttcagattggattccatttaaacttttagttttttcaatgtttgagctatttttggacttgtgaactta |
318 |
Q |
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| T |
30153017 |
aaatggcttcaagcagtggaacttggtttctttcagattggattccatttaaacttttagttttttcactgtttgagctatttttggacttgtgaactta |
30153116 |
T |
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| Q |
319 |
tggttgttaacttagttcaatgttgtaatttagatgttattttatttatctaagataatttttatgcgtgtgtat |
393 |
Q |
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| T |
30153117 |
tggttgttaacttagttcaatgttgtaatttagatgttattttatttatctaagataatttttatgcgtgtgtat |
30153191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 395
Target Start/End: Original strand, 7047381 - 7047463
Alignment:
| Q |
313 |
aacttatggttgttaacttagttcaatgttgtaatttagatgttattttatttatctaagataatttttatgcgtgtgtatat |
395 |
Q |
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| T |
7047381 |
aacttatggttatgaacttagtttaatgttgtgatttagaggttattaatttcatctatgataatttttatgcaagtgtatat |
7047463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 385
Target Start/End: Original strand, 30003903 - 30003958
Alignment:
| Q |
327 |
aacttagttcaatgttgtaatttagatgttattttatttatctaagataatttttatgc |
385 |
Q |
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| T |
30003903 |
aacttagtttaatgttgtaatttagaggttatt---ttcatctacgataatttttatgc |
30003958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 30850728 - 30850672
Alignment:
| Q |
329 |
cttagttcaatgttgtaatttagatgttattttatttatctaagataatttttatgc |
385 |
Q |
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| T |
30850728 |
cttagtttaatgctgtgatttagaagttattttcttcatctatgataatttttatgc |
30850672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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