View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18522_low_17 (Length: 405)
Name: NF18522_low_17
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 157 - 389
Target Start/End: Complemental strand, 31276923 - 31276689
Alignment:
| Q |
157 |
aatttaagttcggtatagatctcgattg--gagtcaaagaccctttaactgcgtgaacgtgtgtagtcggttattgcatggagtgttggtttaaaataca |
254 |
Q |
| |
|
||||||| |||||||||||| || |||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31276923 |
aatttaaattcggtatagatttctattgaagagtcaaagaccctttaactgcgtgaatgtgtctagtcggttattgcatggagtgttggtttaaaataca |
31276824 |
T |
|
| Q |
255 |
cagagtcacaaattaattataataaggttaacgttttgggtttttggttgttttggttattgaaaccatttaaagaacgatataacatgacgctattagg |
354 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31276823 |
cacagtcacaaattaattataataaggttaacgttttgggtttttggttgttttggttattgaaaccatttaaagaacgatataacatgacgctattagg |
31276724 |
T |
|
| Q |
355 |
taaatataacacatgatatgggtgatcattatatt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
31276723 |
taaatataacacatgatatgggtgatcattatatt |
31276689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 31279286 - 31279140
Alignment:
| Q |
1 |
agaccatacaagtttgaaagttattaaagcaaataaaacatagccactaaaccccaagagagaaaaagaatacaccctcaaaatgccttctaaaaacttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31279286 |
agaccatacaagtttgaaagttattaaagcaaataaaacatagccactaaaccccaagagagaaaaagaatacaccctcaaaatgccttctaaaaacttg |
31279187 |
T |
|
| Q |
101 |
ttgatatactcaatatagttgtacatgaaacttagtttaaactacaa |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31279186 |
ttgatatactcaatatagttgtacatgaaacttagtttaaactacaa |
31279140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University