View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_18 (Length: 393)
Name: NF18522_low_18
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 5 - 367
Target Start/End: Original strand, 26886029 - 26886390
Alignment:
| Q |
5 |
ggcatcattttcaacgatcacaccggaacattgattcaattcttggtcccctataaaggaagaaaaaacaatgattattgtaatgtagcaagatcattaa |
104 |
Q |
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| T |
26886029 |
ggcatcattttcaacgatcacaccggaacattgattcaattcttggtcccctataaaggaa-aaaaagcaatgattattgtaatgtagcaagatcattaa |
26886127 |
T |
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| Q |
105 |
aagaaagagagaaagggaatttgagagttgaatagaatacaataccagtagtataagataaaagagcaacaacagaagaagaaaccttaagagcagcttt |
204 |
Q |
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| T |
26886128 |
aagaaagagagaaaaggaattggagagttgaatagaatacaataccagtagtataagataaaagagcaacaacagaagaagaaaccttaagagcagcttt |
26886227 |
T |
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| Q |
205 |
ctttgtctgtatatccagaaagacattatcatctttagaattgaactttggtcgcttagataagttttttatgcgatgcataagttccggatccggctct |
304 |
Q |
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| T |
26886228 |
ctttgtctgtaaatccagaaagacattatcatctttagaattgaactttggtcgcttagataagttttttatgcgatgcataagttccggatccggctct |
26886327 |
T |
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| Q |
305 |
gcatgcaacaatggattatttgtctgtgacatagattaagtacttaattaagaataatagttt |
367 |
Q |
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| T |
26886328 |
gcatgcaacaatggattatttgtctgtgacatagattaagtacttaattaagaataatagttt |
26886390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 102 - 233
Target Start/End: Complemental strand, 26631216 - 26631080
Alignment:
| Q |
102 |
taaaagaaagagagaaagggaatttgagagttgaatagaatacaata-----ccagtagtataagataaaagagcaacaacagaagaagaaaccttaaga |
196 |
Q |
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| T |
26631216 |
taaaagaaagagagaaagggaattggaaagttgaatagaatagaataaaataccagtagtataagataaaagagcaacaacagaagaagaagccttgaga |
26631117 |
T |
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| Q |
197 |
gcagctttctttgtctgtatatccagaaagacattat |
233 |
Q |
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| T |
26631116 |
gcagctttctttgtatttacatccagataggcattat |
26631080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 26631303 - 26631252
Alignment:
| Q |
5 |
ggcatcattttcaacgatcacaccggaacattgattcaattcttggtcccct |
56 |
Q |
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| T |
26631303 |
ggcatcattttcaatgataacaccagaacattgattaaactcttggtcccct |
26631252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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