View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_19 (Length: 393)
Name: NF18522_low_19
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 45390562 - 45390312
Alignment:
| Q |
1 |
atcagctccagaccatgtatcttgcgattcactttggcaatgagcaaaacatgaatttataaatattccccctctgtttgaataaaagtagatgggtttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45390562 |
atcagctccagaccatgtatcttgcgattcactttggcaatgagcaaaacatgaatttataaatattccccctctgtttgaataaaagtagatgggtttc |
45390463 |
T |
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| Q |
101 |
aaagctgcaatcatgctgagcctaaaacctgagtaaagtgcattgaaataaggaaagtcagttctgttcacaattagaaggacgaaatttgaacatgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45390462 |
gaagctgcaatcatgctgagcctaaaacctgagtaaagtgcattgaattaaggaaagtcagttctgttcacaattagaaggacgaaatttgaacatgtg- |
45390364 |
T |
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| Q |
201 |
ttggagtaaactacttaattctttgacaaaagatactaacatgcttattaac |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45390363 |
ttggagtaaactacttaattctttgacaaaagatactaacatgcttattaac |
45390312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 45375406 - 45375155
Alignment:
| Q |
1 |
atcagctccagaccatgtatcttgcgattcactttggcaatgagcaaaacatgaatttataaatattccccctctgtttgaataaaagtagatgggtttc |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |
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| T |
45375406 |
atcagctccagaccatgtatcttgtgattcactttggcaatgagcaaaacatgaatttataaacattcccccgctgtttgaataaaagtagaagggtttc |
45375307 |
T |
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| Q |
101 |
aaagctgcaatcatgctgagcctaaaacctgagtaaagtgcattgaaataaggaaagtcagttctgttcacaattagaaggacgaaatttgaacatgtgt |
200 |
Q |
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| T |
45375306 |
aaagcagcaatcatgctgagcctaaaacctgagtaaagtgcattgaattaaggaaagtcagttctattcacagttaagaggatgaaatttgaagatgtgt |
45375207 |
T |
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| Q |
201 |
ttggagtaaactacttaattctttgacaaaagatactaacatgcttattaac |
252 |
Q |
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| T |
45375206 |
atggagtaaactacttaattctttgacaaaagatactaacatgcttattaac |
45375155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 312 - 374
Target Start/End: Complemental strand, 45375095 - 45375033
Alignment:
| Q |
312 |
tgatggcagaataattgaaagagggaccttgcaatgtattaatttcggttggtgtgcatgccg |
374 |
Q |
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| T |
45375095 |
tgatggcagaataattgaaagagggaccttgcaatgtattaatttcggttggtgtgcatgccg |
45375033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 312 - 374
Target Start/End: Complemental strand, 45390253 - 45390191
Alignment:
| Q |
312 |
tgatggcagaataattgaaagagggaccttgcaatgtattaatttcggttggtgtgcatgccg |
374 |
Q |
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| T |
45390253 |
tgatggcagaataattgaaagagggaccttgcaatgtattaatttcggttggtgtgcatgccg |
45390191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 39018231 - 39017999
Alignment:
| Q |
12 |
accatgtatcttgcgattcactttggcaatgagcaaaacatgaatttataaatattccccctctgtttgaataaaagtagatgggtttcaaagctgcaat |
111 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||| | |||||||||||||| ||||||||||||||||| |
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| T |
39018231 |
accatgtatcttgcgattcactttggcaatgggcaaaacatgaatttataaacaccccccctctatctgaataaaagtagaaaggtttcaaagctgcaat |
39018132 |
T |
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| Q |
112 |
catgctgagcctaaaacctgagtaaagtgcat---tgaaataaggaaagtcagttctgttcacaattagaaggacgaaatttgaacatgtgtttggagta |
208 |
Q |
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||||||| |||||||||||||| |||||||| |||| |||||||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
39018131 |
aatgctgaacctaaaacctgagtgaagtgcattactgaattaaggaaagtaagttctattcacaattagaaggatgaaatttgaacatgtgtatggagta |
39018032 |
T |
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| Q |
209 |
aactacttaattctttgacaaaagatactaaca |
241 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
39018031 |
aactacttaattctttgacaaaagatactaaca |
39017999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 39017922 - 39017863
Alignment:
| Q |
312 |
tgatggcagaataattgaaagagggaccttgcaatgtattaatttcggttggtgtgcatg |
371 |
Q |
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||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39017922 |
tgatggctgaacaattgaaagagggaccttgcaatgtattaatttcggctggtgtgcatg |
39017863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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