View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18522_low_20 (Length: 384)
Name: NF18522_low_20
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 365
Target Start/End: Complemental strand, 6899117 - 6898767
Alignment:
| Q |
15 |
cagagaccacaaacataccaaacaaacacacccaatctctcatagcttccttatacctcctagcgtcaccttcgccagcaccatagtatgtcttccctcc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
6899117 |
cagagaccacaaacataccaaacaaacacacccaatctctcatagcttccttatacctcctagcttcaccttcaccagcaccatagtatgtcttccctcc |
6899018 |
T |
|
| Q |
115 |
caccattctcagagcaatattttgtgtcaaatcaccaaaccactgcttcatatcaaccaaaacaccttcttttggacaaccctttatcgaccataaccta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6899017 |
caccattctcagagcaatattttgtgtcaaatcaccaaaccactgcttcatatcaaccaaaacaccttcttttggacaaccctttatcgaccataaccta |
6898918 |
T |
|
| Q |
215 |
taaagctcacttactgcagcttctatctcagatactcttgtgtccttcaacagttcgagtcggtgatttgaaagaagctcaagtgtagctaacttcctta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
6898917 |
taaagctcacttactgcagcttctatctcagatactcttgtgtccttcaacagttcgagtcggtgattcgaaagaagctcaagtgtagctaatttcctta |
6898818 |
T |
|
| Q |
315 |
tctcacgccaataaggaccataaggagtgaaaccaaacatagcatagttgt |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6898817 |
tctcacgccaataaggaccataaggagtgaaaccaaacatagcatagttgt |
6898767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University