View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_21 (Length: 376)
Name: NF18522_low_21
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 39789346 - 39788994
Alignment:
| Q |
17 |
caacttattaatcaatcgaaacaataacattatcttccaggggaaatacttgcattatatgcctaacttaccaaagctagtagctaggctaggcctagta |
116 |
Q |
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| T |
39789346 |
caacttattaatcaatcgaaacaataacattatcttccaggggaaatacttgcattatatgcctaacttaccaaagctagtagctaggctaggcctagta |
39789247 |
T |
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| Q |
117 |
aatttgactattttttattagaaaatgaaattcgtgactatttatagtctattgagttccatgtcttgtatttatcttccagctttattggacttagatc |
216 |
Q |
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| T |
39789246 |
aatttgactattttttattagaaaatgaaattcgtgactatttatagtctattgagttccatgtcttgtattcatcttccagctttattggacttagatc |
39789147 |
T |
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| Q |
217 |
atagtaattccaacttagaaaaccacaaagtcacactcttattaacatgctttaaagacaataacttctaatttgtgctaaacaaatgggtggattagac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39789146 |
atagtaattccaacttagaaaaccacaaagtcacactcttattaacatgctttaaagacaataacttctaatttgtgctaaacaaatgggtggattagac |
39789047 |
T |
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| Q |
317 |
attaaaggcaatacccatatccacttttgtttgtgctccaatttttcttctct |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39789046 |
attaaaggcaatacccatatccacttttgtttgtgctccaatttttctactct |
39788994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 326 - 369
Target Start/End: Original strand, 9010938 - 9010981
Alignment:
| Q |
326 |
aatacccatatccacttttgtttgtgctccaatttttcttctct |
369 |
Q |
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| T |
9010938 |
aatacccatatccacttttgtttgtgctcgaatttttctcctct |
9010981 |
T |
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