View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_22 (Length: 363)
Name: NF18522_low_22
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 34848156 - 34848016
Alignment:
| Q |
30 |
gatgtcttgataaaatttgaatctaaattaaaaattcacaaatatattagaatatatgtaccttttttcctttcttgtgtacgaactatgagaccatctg |
129 |
Q |
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| T |
34848156 |
gatgtcttgataaaatttgaatctaaattaaaaatttacaaatgtattacaatatatgtaccttttttcctttcttgtgtacgaactatgagaccatctg |
34848057 |
T |
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| Q |
130 |
aaagataaccaatagaggctctatcatcaatggttaatctt |
170 |
Q |
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| T |
34848056 |
aaagataaccaatagaggctctatcatcaatggttaatctt |
34848016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 219 - 347
Target Start/End: Complemental strand, 34847967 - 34847839
Alignment:
| Q |
219 |
tccatgctaaaactctttttcatggacacacaagaagaagataaatcaagttgaacaccaaaaagtctaactccaacaaaactactacttcctcttaatg |
318 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34847967 |
tccatgctaaaactctttttcatggaaacacaagaagaagataaatcaagttgaacaccaaaaagtctaactccaacaaaactaccacttcctcttaatg |
34847868 |
T |
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| Q |
319 |
aattacatgtccttgaattatgacctatg |
347 |
Q |
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||||||| ||||||||||||||||||||| |
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| T |
34847867 |
aattacaagtccttgaattatgacctatg |
34847839 |
T |
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