View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_23 (Length: 359)
Name: NF18522_low_23
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 22054380 - 22054717
Alignment:
| Q |
11 |
tatactcatacataagtaggaattgattgcaatacaaaattgatcattacctctcggtctaccttagataaacacttactactacacaaattaaaannnn |
110 |
Q |
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| T |
22054380 |
tatactcatacataagtaggaattgattgcaatacaaaattgatcattacctctcggtctaccttagatgaacacttactgctacacaaattaatttttt |
22054479 |
T |
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| Q |
111 |
nnn-cttccaaattcgatctttgataaagctaaaagttcctgacttattcgtcttaatctagatggtagcccgaggtacttactagtaaataaaattgca |
209 |
Q |
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| T |
22054480 |
ttttcttccaaattcgatctttgataaagctaaaagttcccgacttattcctcttaatcaagatggtagcttgaggtacttactagttaataaaatcgca |
22054579 |
T |
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| Q |
210 |
tgtacacccaaataattagtaattgaattttgaagagtttgagaaaaatttctgcaacaacatatttctgac-tttggtagactta-agcttaaccagac |
307 |
Q |
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| T |
22054580 |
tgtacacccaaataattagtaattgaattttgaagagtttgagaaaaatttctgcaacaacatatttctgacttttggtagacttagagcttaaccagac |
22054679 |
T |
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| Q |
308 |
actactttctattgtggataaatctaaccatgcttgtg |
345 |
Q |
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| T |
22054680 |
actgctttctattgtggataaatctaactatgtttgtg |
22054717 |
T |
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