View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_24 (Length: 355)
Name: NF18522_low_24
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 29 - 339
Target Start/End: Complemental strand, 43246813 - 43246500
Alignment:
| Q |
29 |
attatcccatgcatgaaattgcattctatatgaaaaatttatgatattatccatagacctccctctcttctataaatacctaccatttcttcttatcctt |
128 |
Q |
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| T |
43246813 |
attatcccatgcatgaaattgcattctatatgaaaaatttatgatattatccatcgacctccctctcttctataaatacctaccatttcttcttatcctt |
43246714 |
T |
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| Q |
129 |
ctcattcaaaacatatccaacaagtactacttttactcatatccaactttgttttacctctcatacatagctttaaacacaaaaacaatgaagttcatca |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43246713 |
ctcattcaaaacatatccaacaagtactacttttactcatatccaactttgttttacctctcatacatagctttaaacacaaaaacaatgaagttcatca |
43246614 |
T |
|
| Q |
229 |
agacccttttccttgtgaccttgctaatggctttg---gctattacactatcatcagcaacatcttctaaaaacgaagaaccaaactctctccaaggaac |
325 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43246613 |
agacccttttccttgtgaccttgctaatggctttgggcgctattacactatcatcagcaacatcttctaaaaacgaagaaccaaactctctccaaggaac |
43246514 |
T |
|
| Q |
326 |
aaaccacttccttt |
339 |
Q |
| |
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|| ||||||||||| |
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| T |
43246513 |
aagccacttccttt |
43246500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 126 - 338
Target Start/End: Complemental strand, 8541395 - 8541189
Alignment:
| Q |
126 |
cttctcattcaaaacatatccaacaagtactacttttactcatatccaactttgttttacctctcatacatagctttaaacacaaaaacaatgaagttca |
225 |
Q |
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|||||||||||||||||||| | |||||| || |||||||| ||||||||| ||||||||||| || |||||||||||||||| |||||||||| |
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| T |
8541395 |
cttctcattcaaaacatatctaccaagtatta---ttactcatttccaactttcttttacctctccta----gctttaaacacaaaaa--atgaagttca |
8541305 |
T |
|
| Q |
226 |
tcaagacccttttccttgtgaccttgctaatggctttggctattacactatcatcagcaacatcttctaaaaacgaagaaccaaac---tctctccaagg |
322 |
Q |
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|||| |||||||| ||| || |||||||||||| |||||| |||||||||||||||||||||||||| |||||| ||||||||| ||||| ||||| |
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| T |
8541304 |
tcaataccctttttcttctggccttgctaatggttttggccattacactatcatcagcaacatcttccttaaacgatgaaccaaactcttctcttcaagg |
8541205 |
T |
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| Q |
323 |
aacaaaccacttcctt |
338 |
Q |
| |
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||||| | |||||||| |
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| T |
8541204 |
aacaagctacttcctt |
8541189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 215 - 337
Target Start/End: Complemental strand, 8551811 - 8551686
Alignment:
| Q |
215 |
aatgaagttcatcaagacccttttccttgtgaccttgctaatggctttggctattacactatcatcagcaacatcttctaaaaacgaagaaccaaactct |
314 |
Q |
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||||||||||||||| |||||||| ||| || ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8551811 |
aatgaagttcatcaataccctttttcttctggccttgctaatggctttggccattacactatcatcagcaacatcttccgaaaacgaagaaccaaactct |
8551712 |
T |
|
| Q |
315 |
---ctccaaggaacaaaccacttcct |
337 |
Q |
| |
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|| |||||||||| ||||||||| |
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| T |
8551711 |
tcacttcaaggaacaagccacttcct |
8551686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 215 - 337
Target Start/End: Complemental strand, 8533048 - 8532920
Alignment:
| Q |
215 |
aatgaagttcatcaagacccttttccttgtgaccttgctaat---ggctttggctattacactatcatcagcaacatcttctaaaaacgaagaaccaaac |
311 |
Q |
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|||||||| ||| ||||| |||||||||||||||||| |||| ||||||| | |||||| |||||||||| |||||||| ||||||||||||||||| |
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| T |
8533048 |
aatgaagtccatgaagactcttttccttgtgaccttgttaattatggctttgaccgttacaccatcatcagcatcatcttctgaaaacgaagaaccaaac |
8532949 |
T |
|
| Q |
312 |
tct---ctccaaggaacaaaccacttcct |
337 |
Q |
| |
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||| || |||||||||| ||||||||| |
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|
| T |
8532948 |
tcttcacttcaaggaacaagccacttcct |
8532920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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