View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_25 (Length: 352)
Name: NF18522_low_25
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_25 |
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| [»] scaffold0339 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 6 - 338
Target Start/End: Complemental strand, 47229693 - 47229347
Alignment:
| Q |
6 |
tgagcttgacactaatcattttatttactataaacttaacaagaaaatataatttaactcgttagctcgaatcacttgaatcaaagatatatataatttg |
105 |
Q |
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| T |
47229693 |
tgagcttgacactaatcattttatttactataaacttaacaagaaaatataatttaactcgttagctcgaatcacttgaatcaaagatatatataatttg |
47229594 |
T |
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| Q |
106 |
agttaacaacctcctaatg--aaataaatacagtaaagttcataacatttgtactgtatgattctttatcaattatcatgatcgctcgaggatctattac |
203 |
Q |
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| T |
47229593 |
agttaacaacctcctagtgaaaaaaaaatatagtaaagttcataacatttgcactgtatgactctttatccattatcatgatcgctcgaggatctattac |
47229494 |
T |
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| Q |
204 |
tctttgatacccctagttctttgagacgcattt---gaggagtatatttaagattttaagttaacaccactaaaccaat---------tttctataatta |
291 |
Q |
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| T |
47229493 |
tctttgatacccctagttctttgagacatatttgaggaggagtacatttaagattttaagttaacaccaccaaaccaattcaattgagtttctataatta |
47229394 |
T |
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| Q |
292 |
taatatgatttacaaaaatttgcatgttcttaaatatatgtccaaac |
338 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
47229393 |
taatattatttacaaaaatttgcatgttactaaatatatgtccaaac |
47229347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0339
Description:
Target: scaffold0339; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 338
Target Start/End: Complemental strand, 8108 - 7760
Alignment:
| Q |
6 |
tgagcttgacactaatcattttatttactataaacttaacaagaaaatataatttaactcgttagctcgaatcacttgaatcaaagatatatataatttg |
105 |
Q |
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| T |
8108 |
tgagcttgacactaatcattttatttactataaacttaacaagaaaatataatttaactcgttagctcgaatcacttgaatcaaagatatatataatttg |
8009 |
T |
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| Q |
106 |
agttaacaacctcctaatg---aaataaat-acagtaaagttcataacatttgtactgtatgattctttatcaattatcatgatcgctcgaggatctatt |
201 |
Q |
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|||||||||||||||| || ||| |||| | |||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
8008 |
agttaacaacctcctagtgagaaaaaaaataatagtaaagttcataacatttgcactgtatgactctttatccattatcatgatcgctcgaggatctatt |
7909 |
T |
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| Q |
202 |
actctttgatacccctagttctttgagacgcattt---gaggagtatatttaagattttaagttaacaccactaaaccaat---------tttctataat |
289 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
7908 |
actctttgatacccctagttctttgagacatatttgaggaggagtacatttaagattttaagttaacaccaccaaaccaattcaattgagtttctataat |
7809 |
T |
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| Q |
290 |
tataatatgatttacaaaaatttgcatgttcttaaatatatgtccaaac |
338 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
7808 |
tataatattatttacaaaaatttgcatgttactaaatatatgtccaaac |
7760 |
T |
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