View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_26 (Length: 351)
Name: NF18522_low_26
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 336
Target Start/End: Original strand, 41404564 - 41404889
Alignment:
| Q |
11 |
cagagatgtgaatcctagttctttatcggataatccagcggtggaaacaagcatgaccacttatcttagcaaggaggcaacaacatcacttgaaattagc |
110 |
Q |
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| T |
41404564 |
cagagatgtgaatcctagttctttatcggataatccagcggtgaaaacaagcatgaccgcttatcttagcaaggaggcaacaacatcacttgaaattagc |
41404663 |
T |
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| Q |
111 |
tgtcaagacaatacaatcagccaagcagaaggtaacaaatttatgtcaatgtgcatgagaccaacataacatttctttgaggaatttaattgatattcgc |
210 |
Q |
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| T |
41404664 |
tgtcaagacaatataatcagccaagcagaaggtaacaaatttatgtcaatgtgcatgagaccaacataaaatttctttgaggaatttaattgatattcgc |
41404763 |
T |
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| Q |
211 |
tataaatcaatcataattgttttaaaaatatttgactttaatcataactactttactcataagatgatttgcgattgattgacggtatcagagatcatta |
310 |
Q |
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| T |
41404764 |
tataaatcaatcataattgttttaaaaatatttgactttaatcataactactttactcataagatgatttgcgattgattgacggtatcagagatcatta |
41404863 |
T |
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| Q |
311 |
ctaatcattattttggctatatatat |
336 |
Q |
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| T |
41404864 |
ctaatcattattttggctatatatat |
41404889 |
T |
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