View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_27 (Length: 347)
Name: NF18522_low_27
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 333
Target Start/End: Complemental strand, 14132365 - 14132042
Alignment:
| Q |
11 |
cacagaaagcagtactagccagactggcctacaacgaaatctacttggaataggttgtatcatgc----cgtcaacttgatcagaaattggaaactagaa |
106 |
Q |
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| T |
14132365 |
cacagaaagcagtactagccagactggcctacaatgaaatctacttggaataggttgtatcatgcatgccgtcaacttgatcagaaattggaaactagaa |
14132266 |
T |
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| Q |
107 |
atctatataaagtaattgttatttggttgtaataattttctagtaactttacaatatcgttacgttgatgtcccccaaaaggcacgtctcttccatgtac |
206 |
Q |
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| T |
14132265 |
atctatataaagtaattgttttttggttgtaataattttctagtaactttacaatatcgtt-----gatgtcccccaaaaggtacgtctcttccatgtac |
14132171 |
T |
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| Q |
207 |
ttgcgcttgtcactagcaacacttattgataaagctgattttcattgaagtactactgtact--atatatatgctaccttactcaagatcattttagtga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14132170 |
ttgcgcttgtcactagcaacacttattgataaagctgattttcattgaagtactactgtactagatatatatgctaccttactcaagatcattttagtga |
14132071 |
T |
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| Q |
305 |
atcctgcaactaaaatactcagaaaagtg |
333 |
Q |
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|||||||||| |||||||||||||||||| |
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| T |
14132070 |
atcctgcaacaaaaatactcagaaaagtg |
14132042 |
T |
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