View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18522_low_28 (Length: 345)
Name: NF18522_low_28
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 26886411 - 26886738
Alignment:
| Q |
1 |
cttactgtaattttctggattgaattcctcttgtatacattctcgtaaccaaggannnnnnnnnnnnnaagattttcttaaacacggcttgtggcgacta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
26886411 |
cttactgtaattttctggattgaattcctcttttatacattctcgtaaccaaggatttttcctcttt-aagattttcttaaacacggcttgtggcgtcta |
26886509 |
T |
|
| Q |
101 |
caaagcacaagaacaacatgaacatgaattattatatcttttctttacatatatagctcaaatcaaaagtatatacaattgagaaacaaatacatacatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26886510 |
caaagcacaagaacaacatgaacatgaattattatttcttttctttacatatatagctcaaatcaaaagtatatacaattgagagacaaatacatacatt |
26886609 |
T |
|
| Q |
201 |
atcatacatatcaattcaattctagttgaccgagagggagctttgtcgagatagagcagatattgaatacgatctatgcttagcctctatttagggtttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26886610 |
atcatacatatcaattcaattctagttgaccgagagggagctttgtcgagatagagcagatattgaatacgatctatgcttagcctctatttagggtttt |
26886709 |
T |
|
| Q |
301 |
tgggttgaaagttgcttttattcaaagtt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
26886710 |
tgggttgaaagttgcttttattcaaagtt |
26886738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University