View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_3 (Length: 613)
Name: NF18522_low_3
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 27 - 601
Target Start/End: Original strand, 40055981 - 40056554
Alignment:
| Q |
27 |
gtagtagtatgcaacacggcaattttgtttggtataattcgagtgtgtgtggcacatgcatagccaccgattccatgctatacgacaacatatccagcca |
126 |
Q |
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| T |
40055981 |
gtagtagtatgcaacacggcaattttgtttggtataattcgagtgtgtgtggcacatgcatggccaccgattccatgctatacgacaacatatccagcca |
40056080 |
T |
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| Q |
127 |
aatacataaatgcacgctgtgtttttattttatttatcttgactaagatgttccttagtcagcatattgtatttgtactattatatgtaaatgtaatata |
226 |
Q |
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| T |
40056081 |
aatacataaatgcacgctgtgtttttattttatttatcttgactaagatgttccttagtcagcatattgtatttgtactattatatgtaaatgtaatata |
40056180 |
T |
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| Q |
227 |
aatcaaccctactaaaggaggtgcatgaacataaatgtataag--atatgtatttataaatggaagggggaaatgattttagccttttggtggtgagcta |
324 |
Q |
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| T |
40056181 |
aatcaaccctacaaaaggaggtgcatgaacataaatgtataagatatatgtatttataaatggaagggggaaatgattttagccttttggtggtgagcta |
40056280 |
T |
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| Q |
325 |
tccctaagaaataagaatatttgttgt--agactattctcactttcacttgataaaagaatcactagtaaaatatgttaaagaattcacaagtgcaccct |
422 |
Q |
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| T |
40056281 |
tccctaagaaataagaatatttgttgtaaagactattctcactttcacttgataaaagaatcactagtaaaatatgttaaagaattcacaagtgcaccct |
40056380 |
T |
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| Q |
423 |
acctagctaggacaacaatactatttactttaatttcttctttgtggtgacataaaattttatatatataatcaactaaatctaatcaagactaggtaga |
522 |
Q |
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| T |
40056381 |
acctagctaggacaacaatactatttactttaatttgttctttgtggtgacataaaattt----tatataatcaactaaatctaatcaagactagaaaga |
40056476 |
T |
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| Q |
523 |
atattttcattcatgttttattgtagttttatatcatgcac-nnnnnnnnttctcaaaaaataacatagatgttgaatct |
601 |
Q |
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| T |
40056477 |
atattttcattcatgttttatagtagttt--tatcatgcacaaaagaattttctcaaaaaataacatagatgttgaatct |
40056554 |
T |
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