View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18522_low_30 (Length: 338)

Name: NF18522_low_30
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18522_low_30
NF18522_low_30
[»] chr2 (12 HSPs)
chr2 (19-322)||(8412610-8412913)
chr2 (19-322)||(8434708-8435011)
chr2 (19-322)||(8394536-8394839)
chr2 (19-129)||(8431635-8431743)
chr2 (19-89)||(8395012-8395082)
chr2 (19-89)||(8406490-8406560)
chr2 (182-322)||(8431775-8431912)
chr2 (182-322)||(8406694-8406831)
chr2 (20-70)||(8417832-8417882)
chr2 (19-77)||(8368873-8368931)
chr2 (19-77)||(8400479-8400537)
chr2 (19-77)||(8422056-8422114)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 8412610 - 8412913
Alignment:
Q  19 caatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcattagaaattgtacaatgcttttgttgttgatc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8412610 caatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcattagaaattgtagaatgcttttgttgttgatc 8412709  T
Q  119 ttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtactgtttgattacttttagttcctgatcatcaacttgttttctagtttgt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8412710 ttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtactgtttgattacttttagttcttgatcatcaacttgttttctagtttgt 8412809  T
Q  219 atctttgacaatgaaatatttgtgagctttgggagatggattgaagcattaattactctctttgaagatgatgataaagaacaagaaattggaactgaag 318  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8412810 atctttgacaatgaaatatttgtgagttttgggagatggattgaagcattaattactttctttgaagatgatgataaagaacaagaaattggaactgaag 8412909  T
Q  319 tttg 322  Q
    ||||    
T  8412910 tttg 8412913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 8434708 - 8435011
Alignment:
Q  19 caatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcattagaaattgtacaatgcttttgttgttgatc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8434708 caatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcattagaaattgtagaatgcttttgttgttgatc 8434807  T
Q  119 ttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtactgtttgattacttttagttcctgatcatcaacttgttttctagtttgt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8434808 ttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtactgtttgattacttttagttcttgatcatcaacttgttttctagtttgt 8434907  T
Q  219 atctttgacaatgaaatatttgtgagctttgggagatggattgaagcattaattactctctttgaagatgatgataaagaacaagaaattggaactgaag 318  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8434908 atctttgacaatgaaatatttgtgagttttgggagatggattgaagcattaattactttctttgaagatgatgataaagaacaagaaattggaactgaag 8435007  T
Q  319 tttg 322  Q
    ||||    
T  8435008 tttg 8435011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 8394839 - 8394536
Alignment:
Q  19 caatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcattagaaattgtacaatgcttttgttgttgatc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  8394839 caatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcattagaatttgtagaatgcttttgttgttgatc 8394740  T
Q  119 ttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtactgtttgattacttttagttcctgatcatcaacttgttttctagtttgt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8394739 ttgtaatatttgtgtgatgttgttgttttctaataatggagtatttttgtactgtttgattacttttagttcttgatcatcaacttgttttctagtttgt 8394640  T
Q  219 atctttgacaatgaaatatttgtgagctttgggagatggattgaagcattaattactctctttgaagatgatgataaagaacaagaaattggaactgaag 318  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||||| | |||||||||    
T  8394639 atctttgacaatgaaatatttgtgagttttgggagatggattgaagcattgattactctatttgaagacgacgataaagaacaagaaagtagaactgaag 8394540  T
Q  319 tttg 322  Q
    ||||    
T  8394539 tttg 8394536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 8431635 - 8431743
Alignment:
Q  19 caatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcattagaaattgtacaatgcttttgttgttgatc 118  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||  |||||||||| ||| || |||||| ||||| |||||||||||||||||||    
T  8431635 caatgttgtgatgcatttctattctgtctgatacagcttctaaaactg--tagagttgaattgtggctttagaatttgtagaatgcttttgttgttgatc 8431732  T
Q  119 ttgtaatattt 129  Q
    |||||||||||    
T  8431733 ttgtaatattt 8431743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 8395082 - 8395012
Alignment:
Q  19 caatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcatta 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8395082 caatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcatta 8395012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 8406490 - 8406560
Alignment:
Q  19 caatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcatta 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8406490 caatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcatta 8406560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 182 - 322
Target Start/End: Original strand, 8431775 - 8431912
Alignment:
Q  182 ttttagttcctgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagctttgggagatggattgaagcattaattactctcttt 281  Q
    ||||| ||| |||||| ||||||||||||| ||||| ||  ||| |||||||||||||| ||| ||||| ||||  |||| |||||||||||||||||||    
T  8431775 ttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcattaattactctcttt 8431874  T
Q  282 gaagatgatgataaagaacaagaaattggaactgaagtttg 322  Q
    |||   |||||||||||||||||| || |||||||||||||    
T  8431875 gaa---gatgataaagaacaagaagttagaactgaagtttg 8431912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 182 - 322
Target Start/End: Original strand, 8406694 - 8406831
Alignment:
Q  182 ttttagttcctgatcatcaacttgttttctagtttgtatctttgacaatgaaatatttgtgagctttgggagatggattgaagcattaattactctcttt 281  Q
    ||||| ||| |||||| ||||||||||||| ||||| ||  ||| |||||||||||||| ||| ||||| ||||  |||| ||| |||||||||||||||    
T  8406694 ttttaattcttgatcaacaacttgttttctggtttgaatagttggcaatgaaatatttgggagttttggaagattaattgcagcgttaattactctcttt 8406793  T
Q  282 gaagatgatgataaagaacaagaaattggaactgaagtttg 322  Q
    |||   |||||||||||||||||| || |||||||||||||    
T  8406794 gaa---gatgataaagaacaagaagttagaactgaagtttg 8406831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 8417832 - 8417882
Alignment:
Q  20 aatgttgtgatgcatttctattctgtctgatacagcttccaagactgcata 70  Q
    |||||||||||||||||| |||||||| || ||| ||||||||||||||||    
T  8417832 aatgttgtgatgcatttcaattctgtcagaaacaacttccaagactgcata 8417882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 8368873 - 8368931
Alignment:
Q  19 caatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttga 77  Q
    ||||||| |||||||||||||||||||| ||||||| ||| |  | |||||||||||||    
T  8368873 caatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttga 8368931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 8400537 - 8400479
Alignment:
Q  19 caatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttga 77  Q
    ||||||| |||||||||||||||||||| ||||||| ||| |  | |||||||||||||    
T  8400537 caatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttga 8400479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 8422114 - 8422056
Alignment:
Q  19 caatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttga 77  Q
    ||||||| |||||||||||||||||||| ||||||| ||| |  | |||||||||||||    
T  8422114 caatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttga 8422056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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