View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18522_low_34 (Length: 321)

Name: NF18522_low_34
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18522_low_34
NF18522_low_34
[»] chr3 (46 HSPs)
chr3 (1-312)||(17941625-17941936)
chr3 (116-312)||(18015880-18016076)
chr3 (116-312)||(19461318-19461514)
chr3 (116-311)||(18115751-18115946)
chr3 (96-312)||(19424382-19424598)
chr3 (116-308)||(19413970-19414162)
chr3 (97-312)||(14896408-14896623)
chr3 (97-310)||(18146597-18146810)
chr3 (96-312)||(17727699-17727914)
chr3 (96-312)||(19028928-19029143)
chr3 (116-313)||(17941524-17941718)
chr3 (116-309)||(19399494-19399687)
chr3 (123-312)||(19333802-19333991)
chr3 (102-275)||(18022574-18022747)
chr3 (116-308)||(19375480-19375672)
chr3 (116-312)||(19436816-19437012)
chr3 (126-311)||(17949624-17949809)
chr3 (116-309)||(19351180-19351373)
chr3 (97-313)||(25462817-25463033)
chr3 (116-310)||(19392935-19393129)
chr3 (127-311)||(18108236-18108420)
chr3 (116-308)||(19380679-19380871)
chr3 (122-312)||(18103222-18103400)
chr3 (97-313)||(16676986-16677202)
chr3 (116-294)||(18164942-18165120)
chr3 (96-237)||(24493511-24493652)
chr3 (97-212)||(18144009-18144124)
chr3 (116-183)||(19436654-19436721)
chr3 (44-91)||(18144162-18144209)
chr3 (1-93)||(18103305-18103400)
chr3 (43-99)||(19424548-19424604)
chr3 (43-90)||(19351326-19351373)
chr3 (1-102)||(14896399-14896503)
chr3 (43-93)||(19333941-19333991)
chr3 (43-92)||(17949760-17949809)
chr3 (43-92)||(18108371-18108420)
chr3 (242-310)||(18144141-18144209)
chr3 (43-95)||(25462982-25463034)
chr3 (277-312)||(19407112-19407147)
chr3 (43-89)||(19414116-19414162)
chr3 (43-93)||(19436962-19437012)
chr3 (43-93)||(19461464-19461514)
chr3 (43-92)||(18115897-18115946)
chr3 (27-91)||(18146743-18146810)
chr3 (43-99)||(16677151-16677207)
chr3 (43-91)||(19393081-19393129)
[»] scaffold0640 (1 HSPs)
scaffold0640 (96-312)||(5169-5385)
[»] chr8 (1 HSPs)
chr8 (116-312)||(8459262-8459458)
[»] chr4 (2 HSPs)
chr4 (99-308)||(2710598-2710807)
chr4 (116-312)||(15532137-15532333)
[»] scaffold2156 (1 HSPs)
scaffold2156 (96-237)||(21-162)
[»] chr6 (1 HSPs)
chr6 (116-297)||(13666911-13667094)
[»] scaffold0648 (1 HSPs)
scaffold0648 (176-312)||(4121-4257)
[»] scaffold0274 (1 HSPs)
scaffold0274 (176-312)||(3591-3727)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 17941625 - 17941936
Alignment:
Q  1 aatctcacttatctttaccttcgggggagcaatatatatgatataccttcaagcttactaaaccttcagaaattgagataccttgatctctctcaaaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  17941625 aatctcacttatctttaccttcgggggagcaatatatatgatataccttcaagcttactaaaccttcagaaattgagatgccttgatctctctcaaaact 17941724  T
Q  101 acttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  17941725 acttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaatttcacctctcatatacctgatgggtt 17941824  T
Q  201 ttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17941825 ttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacac 17941924  T
Q  301 cttcatctctct 312  Q
    ||| ||||||||    
T  17941925 ctttatctctct 17941936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 116 - 312
Target Start/End: Original strand, 18015880 - 18016076
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||   |||||  ||||||||||||||||||||||||||||||||||||||||    
T  18015880 catctgttgagtatttgaatttgccttcacttgtaactctttctctttctttcaacaacttcacctctcatatacctgatgggttttttaatctcaccaa 18015979  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctctct 312  Q
    ||||||||| | ||||||||||    | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  18015980 agatctcacctctcttgacctttcatatagcaatatacatggtgagataccttctagcttgctaaaccttcaaaatttgagacaacttcatctctct 18016076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 116 - 312
Target Start/End: Original strand, 19461318 - 19461514
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| ||||||||||||||||||||| |||||||||||||  |||||||  ||||||  ||||||||||| ||||||||||||||||||||||||||||    
T  19461318 catctgttgagtatttgaatttgtctttacttgtaactcttgatctttctttaaacaatttcacctctcatttacctgatgggttttttaatctcaccaa 19461417  T
Q  216 agatctcacttatcttgacc-ttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctctct 312  Q
    |||||||||||||||||||| ||||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  19461418 agatctcacttatcttgacctttcac-agagtaatatatacggtgagataccttcaagcttgctaaaccttcaaaatttgagagacctttatctctct 19461514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 116 - 311
Target Start/End: Original strand, 18115751 - 18115946
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| ||||||||||||||||||||| |||||||||||||  |||||||  ||||||  ||||||||||| |||||||||||||||||||||| |||||    
T  18115751 catctgttgagtatttgaatttgtctttacttgtaactcttgatctttctttaaacaacttcacctctcatttacctgatgggttttttaatcttaccaa 18115850  T
Q  216 agatctcacttatcttgacc-ttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctctc 311  Q
    |||||||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  18115851 agatctcacttatcttgacctttcac-agagtaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagagacctttatctctc 18115946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 96 - 312
Target Start/End: Original strand, 19424382 - 19424598
Alignment:
Q  96 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgat 195  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||| ||||||| |||  |||||||   |||||  || |||||||| ||||||||    
T  19424382 aaacaacttcatgatcaacccatcaattgagtatttgaatttgtcttcaattgtaacacttgatctttctttcaacaatttcgcctctcatttacctgat 19424481  T
Q  196 gggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttga 295  Q
    ||||||||||||||||||||||||||||| ||||||   |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19424482 gggttttttaatctcaccaaagatctcacctatcttagacttcaccagagcaatatacatggtgggataccttcaagcttgctaaaccttcaaaatttga 19424581  T
Q  296 gacaccttcatctctct 312  Q
     | ||||| ||||||||    
T  19424582 cataccttgatctctct 19424598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 116 - 308
Target Start/End: Original strand, 19413970 - 19414162
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| ||||| ||||||||||||||||| |||||||||||  |||||||   |||||  ||||||||||||||||||||||||||||||||||||||||    
T  19413970 catctgttgagcatttgaatttgtcttcaattgtaactcttgatctttcttacaacaacttcacctctcatatacctgatgggttttttaatctcaccaa 19414069  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatct 308  Q
    ||||||||| | ||||||||||    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19414070 agatctcacctctcttgacctttcatatagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatct 19414162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 97 - 312
Target Start/End: Complemental strand, 14896623 - 14896408
Alignment:
Q  97 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatg 196  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||| ||||  |||||||  ||||||  ||||||||||| | ||  |||    
T  14896623 aacaacttcatgttcaactcatcttttgagtatttgaatttgtcttcaattgtaattcttaatctttctttaaacaacttcacctctcatttgccaaatg 14896524  T
Q  197 ggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgag 296  Q
    |||||||||||||||| ||| ||||||| |||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  14896523 ggttttttaatctcacaaaaaatctcacctatctttaccttcatgaaagcaatatacatggtgagataccttcaagcttgctaaaccttcaaattttaag 14896424  T
Q  297 acaccttcatctctct 312  Q
    ||||||| ||||||||    
T  14896423 acaccttgatctctct 14896408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 97 - 310
Target Start/End: Original strand, 18146597 - 18146810
Alignment:
Q  97 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatg 196  Q
    ||||||||||| || | | ||||||||| |||||||||||||||||||||| ||||||||  |||||| ||||| ||  | ||||||||| |||||||||    
T  18146597 aacaacttcataattaacacatctattgggtatttgaatttgtcttcacttataactcttgatctttcaggaaataatttaacctctcatttacctgatg 18146696  T
Q  197 ggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgag 296  Q
    ||| ||||||||| ||||||||| |||  ||||||  |||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18146697 ggtattttaatcttaccaaagatatcaactatcttagccttgaggagagcaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgag 18146796  T
Q  297 acaccttcatctct 310  Q
    ||||||| ||||||    
T  18146797 acaccttaatctct 18146810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 96 - 312
Target Start/End: Complemental strand, 17727914 - 17727699
Alignment:
Q  96 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgat 195  Q
    |||||||||| ||||||   ||||||||||||||||||||||||||||| |||||||||||| ||||||    ||| |  ||||||||||  | |||| |    
T  17727914 aaacaacttcctgatcaatccatctattgagtatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcactt-cctggt 17727816  T
Q  196 gggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttga 295  Q
    || |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |    
T  17727815 ggattttttaatctcaccaaagatctcacctatgttgaccttcacgagagcaatatacatggtgagataccttctagcttggtaaaccttcaaaatttaa 17727716  T
Q  296 gacaccttcatctctct 312  Q
     |||||||  |||||||    
T  17727715 cacaccttggtctctct 17727699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 96 - 312
Target Start/End: Complemental strand, 19029143 - 19028928
Alignment:
Q  96 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgat 195  Q
    |||||||||| ||||||   ||||||||||||||||||||||||||||| |||||||||||| ||||||    ||| |  ||||||||||  | |||| |    
T  19029143 aaacaacttcctgatcaatccatctattgagtatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctcactt-cctggt 19029045  T
Q  196 gggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttga 295  Q
    || |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |    
T  19029044 ggattttttaatctcaccaaagatctcacctatgttgaccttcacgagagcaatatacatggtgagataccttctagcttggtaaaccttcaaaatttaa 19028945  T
Q  296 gacaccttcatctctct 312  Q
     |||||||  |||||||    
T  19028944 cacaccttggtctctct 19028928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 116 - 313
Target Start/End: Original strand, 17941524 - 17941718
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||  |||||||| |||||||||||||||||||||||||||||||    
T  17941524 catctgttgaatatttgaatttgtcttcacttgtaactctttctctttctagaaacaatttcacctcttatatacctgatgggttttttaatctcaccaa 17941623  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctctctc 313  Q
    | |||||||||||||| ||||||  | |||||||||| |   ||| |||||||||||||| ||||||||||| || ||||||  |||| |||||||||    
T  17941624 aaatctcacttatctttaccttcgggggagcaatatata---tgatataccttcaagcttactaaaccttcagaaattgagatgccttgatctctctc 17941718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 116 - 309
Target Start/End: Original strand, 19399494 - 19399687
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||||    |||||  |||||| ||||||||||||||||||||||||| |||||||    
T  19399494 catctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaa 19399593  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 309  Q
    ||||||||| | |||| ||||| || | | ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||    
T  19399594 agatctcacctgtctttaccttgacaataacaatatatatggtgagataccttcaagcttgctaacccttcaaaatttgaaacaccttgatctc 19399687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 123 - 312
Target Start/End: Original strand, 19333802 - 19333991
Alignment:
Q  123 tgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaaagatctc 222  Q
    |||||||||||||||||||||| |||||||||||  ||||||| |||||||  | ||||||||| ||| ||||||||||||||||||  |||||||||||    
T  19333802 tgagtatttgaatttgtcttcaattgtaactcttgatctttctagaaacaactttacctctcatttacttgatgggttttttaatctttccaaagatctc 19333901  T
Q  223 acttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctctct 312  Q
    |  ||||| ||||||     || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19333902 aagtatctcgacctttcttggaacaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctct 19333991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 102 - 275
Target Start/End: Original strand, 18022574 - 18022747
Alignment:
Q  102 cttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttt 201  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||  |||||||   |||||  ||||||||||| ||||  ||||||||    
T  18022574 cttcatgatcaacccatctattgagtatttgaatttgtcttcacttgtaactcttgatctttctttcaacaacttcacctctcatttaccaaatgggttt 18022673  T
Q  202 tttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagctt 275  Q
    |||||||||||||||||| |||  ||||||| |||    |||||||||||||||||||||||||||||||||||    
T  18022674 tttaatctcaccaaagatatcaactatcttgtcctcttagagagcaatatacatggtgagataccttcaagctt 18022747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 116 - 308
Target Start/End: Original strand, 19375480 - 19375672
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| |||||| |||||||||||||||| |||||| ||||  |||||||  ||||||  |||||| |||| ||||||||||||||||||||||||||||    
T  19375480 catctgttgagtttttgaatttgtcttcaattgtaagtcttgatctttcttcaaacaatttcacctttcatttacctgatgggttttttaatctcaccaa 19375579  T
Q  216 agatctcacttatcttgaccttcacga-gagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatct 308  Q
    |||| |||| ||||||||||||  ||| ||  |||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  19375580 agatatcacctatcttgacctt-gcgatgaataatatatatggtgagataccttcaagcttgctaaaccttccaaatttgagacaacttgatct 19375672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 116 - 312
Target Start/End: Original strand, 19436816 - 19437012
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 215  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||| |  ||| |  ||||||||||  |||| |||||||||||||||||||||||    
T  19436816 catctattcagtatttaaatttgtcttcacttgtaactctttatctttcagataacgatttcacctctcacttaccggatgggttttttaatctcaccaa 19436915  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctctct 312  Q
    ||||||||| | |||| |||||      | |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  19436916 agatctcacctctctttacctttcgtttaacaatattcatggggagataccttctagcttgctaaaccttcaaaatttgagacaccttgatctctct 19437012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 126 - 311
Target Start/End: Original strand, 17949624 - 17949809
Alignment:
Q  126 gtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaaagatctcact 225  Q
    |||||||||||| ||||||||||||||||||| ||||  || ||||||  ||||||| ||| ||||  |||||||||| ||||||||||||||| ||||     
T  17949624 gtatttgaatttatcttcacttgtaactctttatcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcaccaaagatatcacc 17949723  T
Q  226 tatcttgacctt-cacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctctc 311  Q
    | |||||||||| ||| | |  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17949724 tctcttgaccttgcactaaat-aatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctc 17949809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 116 - 309
Target Start/End: Original strand, 19351180 - 19351373
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||| | |||| ||  ||| || | || |||| |||||||||||||||||||||||    
T  19351180 catctgttgagtatttgaatttgtcttcacttgtaactcttgatctttttcgaaataacttcaactttaatttaccagatgggttttttaatctcaccaa 19351279  T
Q  216 agatctcacttatcttgacc-ttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctc 309  Q
    |||||||||||||||| ||| ||||| | || |||||| ||||| |||||||||||||||| ||||||||||||||  ||||||||||| |||||    
T  19351280 agatctcacttatcttcacctttcac-aaagtaatatatatggtaagataccttcaagcttactaaaccttcaaaaactgagacaccttgatctc 19351373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 97 - 313
Target Start/End: Original strand, 25462817 - 25463033
Alignment:
Q  97 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatg 196  Q
    ||||||||||||| ||  |||||||||| |||||||||||||||||| ||| ||||||||  |||||||   |||||  ||||||||||| |||||||||    
T  25462817 aacaacttcatgaccaaatcatctattgggtatttgaatttgtcttcgcttttaactcttgatctttcttacaacaacttcacctctcatttacctgatg 25462916  T
Q  197 ggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgag 296  Q
    | |||||||||||| | |||||| |||  ||||||||||||      |  ||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  25462917 gtttttttaatctctcaaaagatttcatgtatcttgacctttcatttaataatgtacatggtgacataccttcaagcttgctaaaccttcaaaatttgag 25463016  T
Q  297 acaccttcatctctctc 313  Q
    ||||||| |||| ||||    
T  25463017 acaccttgatctatctc 25463033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 116 - 310
Target Start/End: Original strand, 19392935 - 19393129
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| |||||||||||||||||||||||||||||||||||  |||||||   |||||  |||||||  |||||||| |||||||||||||||  ||||     
T  19392935 catcttttgagtatttgaatttgtcttcacttgtaactcttgatctttcttacaacaacttcacctccaatatacctaatgggttttttaatcgtaccac 19393034  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctct 310  Q
    | ||  ||| || ||| ||||| | |||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||    
T  19393035 atatgccacctaccttcaccttaaggagagcaacatatatggtgagataccttcaagtttgctaaaccttcaaaatttgagataccttaatctct 19393129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 127 - 311
Target Start/End: Original strand, 18108236 - 18108420
Alignment:
Q  127 tatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaaagatctcactt 226  Q
    ||||||||||||||||||||||||||||||  ||||  || ||||||  ||||||| ||| ||||  |||||||||| ||||||||||| ||| |||| |    
T  18108236 tatttgaatttgtcttcacttgtaactcttaatcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcaccaatgatatcacct 18108335  T
Q  227 atcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctctc 311  Q
     ||||||||||     ||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18108336 ctcttgaccttgcgctgaataatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctc 18108420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 116 - 308
Target Start/End: Original strand, 19380679 - 19380871
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| ||||||||||||||||||||||||||||||||||   |||||||||||||||  ||||||||||  |||| |||||||| ||||||||||| ||    
T  19380679 catctgttgagtatttgaatttgtcttcacttgtaactctccatctttctggaaacaacttcacctctcacttaccagatgggttgtttaatctcacgaa 19380778  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatct 308  Q
    |||| |||  | ||||    || | |  ||||||||| |||||||||| ||||||||||||||||||||||||||||||| || |||| ||||    
T  19380779 agatatcaactctcttagatttgagggtagcaatatatatggtgagatgccttcaagcttgctaaaccttcaaaatttgaaactccttgatct 19380871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 122 - 312
Target Start/End: Original strand, 18103222 - 18103400
Alignment:
Q  122 ttgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaaagatct 221  Q
    |||||||||||||||||| |||| ||||||| |||  |||||| | ||||||  |||| | |||| ||| ||||||||||||||||||||||            
T  18103222 ttgagtatttgaatttgtattcaattgtaacccttgatctttcagaaaacaatttcacttttcatttacatgatgggttttttaatctcacc-------- 18103313  T
Q  222 cacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctctct 312  Q
        |||||| |||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18103314 ----tatcttcaccttcgcgataacaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctct 18103400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 313
Target Start/End: Original strand, 16676986 - 16677202
Alignment:
Q  97 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatg 196  Q
    |||||||||||| ||| ||||||||||| |||||||||||  |||||| |||||||||||  |||||||   |||||  | |||| |||  |||   | |    
T  16676986 aacaacttcatgctcaactcatctattgggtatttgaattcctcttcaattgtaactcttgatctttcttacaacaatttaacctttcagttactaaacg 16677085  T
Q  197 ggttttttaatctcaccaaagatctcacttatcttgacctt-cacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttga 295  Q
    ||||||| ||||||||||||||| |||   ||||||||||| || | ||  |||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  16677086 ggtttttaaatctcaccaaagatatcaagcatcttgacctttcatg-gaataatatacatggtgagataccttcaagcttgttaaaccttcaacatttga 16677184  T
Q  296 gacaccttcatctctctc 313  Q
    |||||||| || ||||||    
T  16677185 gacaccttgatgtctctc 16677202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 294
Target Start/End: Original strand, 18164942 - 18165120
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| || ||||| |||||||||||||| |||||||||||  |||||||   ||| |  ||||||||||  ||| |||||| |||||||||||||||||    
T  18164942 catcttttaagtatgtgaatttgtcttcaattgtaactcttgatctttcttacaactatttcacctctcacttacttgatggattttttaatctcaccaa 18165041  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttg 294  Q
    |||| |||  | ||||  ||||   | || ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  18165042 agatatcaactttcttagcctttcagggaacaatataaatggtgagataccttcaagcttgctaaaacttcaaaatttg 18165120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 24493652 - 24493511
Alignment:
Q  96 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgat 195  Q
    ||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||||  |||||||| ||||||  ||| ||||||  ||||  ||    
T  24493652 aaacaacttcatgatcaactcattttttgagtattcgaatttgtcttcacttgtaactcttgatctttctgaaaacaacttcagctctcagttaccaaat 24493553  T
Q  196 gggttttttaatctcaccaaagatctcacttatcttgacctt 237  Q
    |  |||||||| |||||||||||| |||| ||||||| ||||    
T  24493552 gcattttttaacctcaccaaagatatcacctatcttggcctt 24493511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 18144009 - 18144124
Alignment:
Q  97 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatg 196  Q
    |||||||| ||||||| | ||| |||  |||||||||||||||| ||| |||||||||||  |||||||  ||||||  ||||||||||| ||||||||     
T  18144009 aacaacttaatgatcaacccatatatcaagtatttgaatttgtcgtcaattgtaactcttgatctttctttaaacaacttcacctctcatttacctgata 18144108  T
Q  197 ggttttttaatctcac 212  Q
    ||||||||||||||||    
T  18144109 ggttttttaatctcac 18144124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 19436654 - 19436721
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctct 183  Q
    ||||| |||||||||| ||||| ||||||||||||||||||  |||||||||||||||| ||||||||    
T  19436654 catctgttgagtatttcaatttatcttcacttgtaactcttgatctttctggaaacaaattcacctct 19436721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 18144162 - 18144209
Alignment:
Q  44 taccttcaagcttactaaaccttcagaaattgagataccttgatctct 91  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||    
T  18144162 taccttcaagcttgctaaaccttcagaaatcgagataccttgatctct 18144209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 18103305 - 18103400
Alignment:
Q  1 aatctcacttatctttaccttcgggggagcaatatatatgat---ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 93  Q
    |||||||| |||||| ||||||| |  | ||||||||||| |   |||||||||||||| ||||||||||| || |||||| ||||||||||||||    
T  18103305 aatctcacctatcttcaccttcgcgataacaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctct 18103400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 19424548 - 19424604
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctctcaaaac 99  Q
    |||||||||||||| ||||||||||| || |||| |||||||||||||||| |||||    
T  19424548 ataccttcaagcttgctaaaccttcaaaatttgacataccttgatctctctgaaaac 19424604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 19351326 - 19351373
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctc 90  Q
    |||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  19351326 ataccttcaagcttactaaaccttcaaaaactgagacaccttgatctc 19351373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 14896503 - 14896399
Alignment:
Q  1 aatctcacttatctttaccttcgggggagcaatatatatgat---ataccttcaagcttactaaaccttcagaaattgagataccttgatctctctcaaa 97  Q
    |||||||| |||||||||||||  |  ||||||||| ||| |   |||||||||||||| ||||||||||| |  || ||| |||||||||||||| |||    
T  14896503 aatctcacctatctttaccttcatgaaagcaatatacatggtgagataccttcaagcttgctaaaccttcaaattttaagacaccttgatctctctaaaa 14896404  T
Q  98 acaac 102  Q
    |||||    
T  14896403 acaac 14896399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 19333941 - 19333991
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 93  Q
    |||||||||||||| ||||||||||| || |||||| ||||||||||||||    
T  19333941 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctct 19333991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 17949760 - 17949809
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctc 92  Q
    |||||||||||||| ||||||||||| || |||||| |||||||||||||    
T  17949760 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctc 17949809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 18108371 - 18108420
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctc 92  Q
    |||||||||||||| ||||||||||| || |||||| |||||||||||||    
T  18108371 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctc 18108420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 18144141 - 18144209
Alignment:
Q  242 agagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctct 310  Q
    |||| |||||| |||||||  ||||||||||||||||||||||||| || | |||| ||||| ||||||    
T  18144141 agagtaatatatatggtgacttaccttcaagcttgctaaaccttcagaaatcgagataccttgatctct 18144209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 25462982 - 25463034
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctctca 95  Q
    |||||||||||||| ||||||||||| || |||||| |||||||||| |||||    
T  25462982 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctatctca 25463034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 312
Target Start/End: Original strand, 19407112 - 19407147
Alignment:
Q  277 ctaaaccttcaaaatttgagacaccttcatctctct 312  Q
    ||||||||||||||||||||||||||| ||||||||    
T  19407112 ctaaaccttcaaaatttgagacaccttgatctctct 19407147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Original strand, 19414116 - 19414162
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatct 89  Q
    |||||||||||||| ||||||||||| || |||||| ||||||||||    
T  19414116 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatct 19414162  T

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Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 19436962 - 19437012
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 93  Q
    |||||||| ||||| ||||||||||| || |||||| ||||||||||||||    
T  19436962 ataccttctagcttgctaaaccttcaaaatttgagacaccttgatctctct 19437012  T

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Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 19461464 - 19461514
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 93  Q
    |||||||||||||| ||||||||||| || |||||| ||||| ||||||||    
T  19461464 ataccttcaagcttgctaaaccttcaaaatttgagagacctttatctctct 19461514  T

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Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 18115897 - 18115946
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctc 92  Q
    |||||||||||||| ||||||||||| || |||||| ||||| |||||||    
T  18115897 ataccttcaagcttgctaaaccttcaaaatttgagagacctttatctctc 18115946  T

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Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 18146743 - 18146810
Alignment:
Q  27 gagcaatatatatgat---ataccttcaagcttactaaaccttcagaaattgagataccttgatctct 91  Q
    |||||||||||||| |   |||||||||||||| ||||||||||| || |||||| ||||| ||||||    
T  18146743 gagcaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttaatctct 18146810  T

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Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 16677151 - 16677207
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctctcaaaac 99  Q
    ||||||||||||||  ||||||||||  | |||||| |||||||| |||||||||||    
T  16677151 ataccttcaagcttgttaaaccttcaacatttgagacaccttgatgtctctcaaaac 16677207  T

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Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 19393081 - 19393129
Alignment:
Q  43 ataccttcaagcttactaaaccttcagaaattgagataccttgatctct 91  Q
    ||||||||||| || ||||||||||| || |||||||||||| ||||||    
T  19393081 ataccttcaagtttgctaaaccttcaaaatttgagataccttaatctct 19393129  T

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Target: scaffold0640 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 96 - 312
Target Start/End: Original strand, 5169 - 5385
Alignment:
Q  96 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgat 195  Q
    |||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||  | |||||  || ||||  ||    
T  5169 aaacaacttcatgatcaaaccatctattgagtatttcaatttgtcttcacttgtaactctttatctttctggaaacaactttacctccaatttaccaaat 5268  T
Q  196 gggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttga 295  Q
    |||||||||||||| ||||||||| |||| | ||||||||||    | |  |||||| |||| ||||||||||| ||| |||||||||||||||||||||    
T  5269 gggttttttaatctaaccaaagatatcacctctcttgaccttgcgcaaaataatatatatggcgagataccttctagcatgctaaaccttcaaaatttga 5368  T
Q  296 gacaccttcatctctct 312  Q
    |||| ||| ||||||||    
T  5369 gacatcttgatctctct 5385  T

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Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 116 - 312
Target Start/End: Original strand, 8459262 - 8459458
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||||| | |||||  |||| |||| | ||||| |||||||||||||||| |||||    
T  8459262 catctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcttggaacaacttcacatctcctttacctaatgggttttttaatctgaccaa 8459361  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctctct 312  Q
    |||| |||| ||||||||||||   |   || ||||| |||| ||||| |||||||||||| || |||||| |||||||||||||||| ||||||||    
T  8459362 agatatcacctatcttgacctttcggtttgccatatatatggcgagatgccttcaagcttgttataccttccaaatttgagacaccttgatctctct 8459458  T

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Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 99 - 308
Target Start/End: Complemental strand, 2710807 - 2710598
Alignment:
Q  99 caacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatggg 198  Q
    |||||||||||||| | | |||||||  ||||||||||||||||||||| ||||||||   |||||| | |||||  ||||||||| | ||||  |||||    
T  2710807 caacttcatgatcaacccgtctattgcatatttgaatttgtcttcacttataactcttgaactttcttggaacaacttcacctctcctttaccaaatggg 2710708  T
Q  199 ttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagac 298  Q
    |||||||||||||||||| |  |||  ||||||||||||    | |||||||||||||||||||||||||| |||||| |||| |||| |||||||||||    
T  2710707 ttttttaatctcaccaaacacatcaactatcttgacctttcatatagcaatatacatggtgagataccttctagcttgttaaagcttcgaaatttgagac 2710608  T
Q  299 accttcatct 308  Q
    | ||| ||||    
T  2710607 aactttatct 2710598  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 312
Target Start/End: Original strand, 15532137 - 15532333
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 215  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||| | |||||  ||| |  |||| ||||  ||||||||||||||||  ||||    
T  15532137 catctatcgagtatttgaatttgtcttcacttgtaactcttgatctttcttggaacaacttcagccatcatttaccaaatgggttttttaatctttccaa 15532236  T
Q  216 agatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttcatctctct 312  Q
    | |||||| |||||||||||||    | |  ||||||| || ||||||||||||||| |||||||| |||||||||||||||  |||| ||||||||    
T  15532237 atatctcaattatcttgacctttcaaaaaataatatacttgatgagataccttcaagtttgctaaatcttcaaaatttgagaatccttgatctctct 15532333  T

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Target: scaffold2156 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 162 - 21
Alignment:
Q  96 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgat 195  Q
    |||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||  | |||||  || ||||  ||    
T  162 aaacaacttcatgatcaatccatctattgagtatttcaatttgtcttcacttgtaactctttatctttctggaaacaactttacctccaatttaccaaat 63  T
Q  196 gggttttttaatctcaccaaagatctcacttatcttgacctt 237  Q
    |||||||||||||| ||||||||| |||| | ||||||||||    
T  62 gggttttttaatctaaccaaagatatcacctctcttgacctt 21  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 116 - 297
Target Start/End: Complemental strand, 13667094 - 13666911
Alignment:
Q  116 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaaaatcacctctcatatacctgatgggttttttaatctcaccaa 215  Q
    ||||| |||||||||||||||||||||| || |||||||||  |||||||| ||||||  ||||||||||||||||| ||| ||||||||||||||||||    
T  13667094 catctcttgagtatttgaatttgtcttcgctggtaactcttgatctttctgaaaacaacttcacctctcatatacctaatgagttttttaatctcaccaa 13666995  T
Q  216 agatctcacttatcttgacc-ttcacgagagca--atatacatggtgagataccttcaagcttgctaaaccttcaaaatttgaga 297  Q
    | |||||||   | |||||| ||||| | || |  ||||| ||||| | |||||||||| |||||||||| |||||| |||||||    
T  13666994 aaatctcaccactgttgacctttcac-atagtaatatatatatggtaaaataccttcaaccttgctaaacattcaaactttgaga 13666911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 176 - 312
Target Start/End: Complemental strand, 4257 - 4121
Alignment:
Q  176 tcacctctcatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagctt 275  Q
    |||||||| || ||||  |||||||||||||||||||||||||| |||| | ||||||||||    | |  |||||| ||||||||||||||   |||||    
T  4257 tcacctctaatttaccaaatgggttttttaatctcaccaaagatatcacctctcttgaccttgcgcaaaataatatatatggtgagatacctcgtagctt 4158  T
Q  276 gctaaaccttcaaaatttgagacaccttcatctctct 312  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  4157 gctaaaccttcaaaatttgagacatcttgatctctct 4121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 176 - 312
Target Start/End: Complemental strand, 3727 - 3591
Alignment:
Q  176 tcacctctcatatacctgatgggttttttaatctcaccaaagatctcacttatcttgaccttcacgagagcaatatacatggtgagataccttcaagctt 275  Q
    |||||||| || ||||  |||||||||||||||||||||||||| |||| | ||||||||||    | |  |||||| ||||||||||||||   |||||    
T  3727 tcacctctaatttaccaaatgggttttttaatctcaccaaagatatcacctctcttgaccttgcgcaaaataatatatatggtgagatacctcgtagctt 3628  T
Q  276 gctaaaccttcaaaatttgagacaccttcatctctct 312  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  3627 gctaaaccttcaaaatttgagacatcttgatctctct 3591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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