View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_36 (Length: 316)
Name: NF18522_low_36
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 53068122 - 53067839
Alignment:
| Q |
17 |
atagcatgactgagtaaaccatactgcaaatagtggttgttttcgtgaagattatgtgatcggtgaaatcgagagtgaagactgagagccataatggttt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53068122 |
atagcatgactgagtaaaccatactgcaaatagtggttgttttcgtgaagattatgtgatcggtgaaattgagagtgaagactgagagccataatggttt |
53068023 |
T |
|
| Q |
117 |
ccacctcttggggaggatgcttgtggcgacggtgtctttggttgggagaatggagagaatgtgatagataatcgagtccagaagggagctaaccttgttg |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53068022 |
ccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgatagataatcgagtccggaagggagctaaccttgttg |
53067923 |
T |
|
| Q |
217 |
cgctcttctattggaatcgatgatcgccgcttcttcgacttggacataactactgattgcaaaaaccaggaaagtgaattctga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
53067922 |
cgctcttctattggaatcgatgatcgccgcttcttcgacttggacatagctactgattgcaaaaaccagaaaagtgaattctga |
53067839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 53340942 - 53341194
Alignment:
| Q |
17 |
atagcatgactgagtaaaccatactgcaaatagtggttgttttcgtgaagattatgtgatcggtgaaatcgagagtgaagactgagagccataatggttt |
116 |
Q |
| |
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|||||| ||||||||||| |||||||||||||||| ||| |||||||||| |||||||||| ||||||||||||| |||||||| ||||||||||| |
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| T |
53340942 |
atagcaagactgagtaaatatgactgcaaatagtggttatttccgtgaagattgtgtgatcggtaaaatcgagagtgaggactgagatacataatggttt |
53341041 |
T |
|
| Q |
117 |
ccacctcttggggaggatgcttgtggcgacggtgtctttggttgggagaatggagagaatgtgatagataatcgagtccagaagggagctaaccttgttg |
216 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||| ||| | |
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| T |
53341042 |
ccacctctttgagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattgagtctggaagggagctaaccctgtcg |
53341141 |
T |
|
| Q |
217 |
------cgctcttctattggaatcgatgatcgccgcttcttcgacttggacat |
263 |
Q |
| |
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| |||||||||||| |||||||||||| ||||||| ||||| ||||| |
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| T |
53341142 |
tactcacactcttctattggtatcgatgatcgctgcttcttggactttgacat |
53341194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 89 - 263
Target Start/End: Complemental strand, 53059117 - 53058940
Alignment:
| Q |
89 |
gagtgaagactgagagccataatggtttccacctcttggggaggatgcttgtggcgacggtgtctttggttgggagaatggagagaatgtgatagataat |
188 |
Q |
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|||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
53059117 |
gagtgaggactgagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataat |
53059018 |
T |
|
| Q |
189 |
cgagtccagaagggagctaaccttgttgcgctcttctattggaatcga---tgatcgccgcttcttcgacttggacat |
263 |
Q |
| |
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|||||| |||||||||||||| ||| | |||||| ||||||||||| ||||||| ||||||||||||||||||| |
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| T |
53059017 |
tgagtccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat |
53058940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 53062376 - 53062121
Alignment:
| Q |
17 |
atagcatgactgagtaaaccatactgcaaatagtggttgttttcgtgaagattatgtgatcggtgaaatcgagagtgaagactgagagccataatggttt |
116 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||| ||||||||| || ||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
53062376 |
atagcatgactgagtaaacatgactgcaaagagatgttgtcttcgtgaagtttgggtggtcggtgaaatcgagagtgaagacatagagccataatggttt |
53062277 |
T |
|
| Q |
117 |
ccacctcttggggaggatgcttgtggcgacggtgtctttggttgggagaatggagagaatgtgatagat-----aatcgagtccagaagggag-ctaacc |
210 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| | | ||||| |||||||| |||||| |
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| T |
53062276 |
ccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagatagttgagttgagtctggaagggagactaacc |
53062177 |
T |
|
| Q |
211 |
ttgttgcgctcttctattggaatc---gatgatcgccgcttcttcgacttggacat |
263 |
Q |
| |
|
||| | |||||| ||||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
53062176 |
ctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat |
53062121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 71 - 263
Target Start/End: Complemental strand, 37418409 - 37418217
Alignment:
| Q |
71 |
tgtgatcggtgaaatcgagagtgaagactgagagccataatggtttccacctcttggggaggatgcttgtggcgacggtgtctttggttgggagaatgga |
170 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||| | |||||||||||||||||| ||||||||||||||||||| ||| |
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|
| T |
37418409 |
tgtgctcggtgaaatcgagggtgaagactgagagccacaatgggttccacctctttgagaggatgcttgtggcgacagtgtctttggttgggagaaagga |
37418310 |
T |
|
| Q |
171 |
gagaatgtgatagataatcgagtccagaagggagctaaccttgttgcgctcttctattggaatcgatgatcgccgcttcttcgacttggacat |
263 |
Q |
| |
|
|||||| ||| ||||||| ||||| |||||||||||||| ||| || || |||| |||||||| ||||||| ||||||||||||||||||| |
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| T |
37418309 |
gagaatatgacagataattgagtctggaagggagctaaccctgtcgcacttttctgttggaatccatgatcgttgcttcttcgacttggacat |
37418217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 53972116 - 53972210
Alignment:
| Q |
100 |
gagagccataatggtttccacctcttggggaggatgcttgtggcgacggtgtctttggttgggagaatggagagaatgtgatagataatcgagtc |
194 |
Q |
| |
|
|||| ||||||||| ||||||||||| | ||||||| |||||| | ||| |||||||||||| |||| ||||| |||| | ||||||| ||||| |
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|
| T |
53972116 |
gagatccataatggcttccacctctttgagaggatggttgtgggggcggagtctttggttggaagaaaagagagtatgtaagagataattgagtc |
53972210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 43 - 264
Target Start/End: Complemental strand, 31013865 - 31013641
Alignment:
| Q |
43 |
caaatagtggttgttttcgtgaagattatgtgatcggtgaaatcgagagtgaagactgagagccataatggtttccacctcttggggaggatgcttgtgg |
142 |
Q |
| |
|
|||| |||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
31013865 |
caaagagtggttgttttgatgaagacattgtgattggtgaaatcgagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtgg |
31013766 |
T |
|
| Q |
143 |
cgacggtgtctttggttgggagaatggagagaatgtgatagataatcgagtccagaagggagctaaccttgttgcgctcttctattggaatcgatgatcg |
242 |
Q |
| |
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||||||||||||||||||| |||| ||||||||||||| ||||||| |||||| ||||||||||| || ||| || |||||||||||||||||||||||| |
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| T |
31013765 |
cgacggtgtctttggttggtagaaaggagagaatgtgacagataattgagtccggaagggagctatccctgtcgcactcttctattggaatcgatgatcg |
31013666 |
T |
|
| Q |
243 |
ccg---cttcttcgacttggacata |
264 |
Q |
| |
|
| | ||||||||||||||||||| |
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|
| T |
31013665 |
ctgattcttcttcgacttggacata |
31013641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 20001140 - 20001198
Alignment:
| Q |
85 |
tcgagagtgaagactgagagccataatggtttccacctcttggggaggatgcttgtggc |
143 |
Q |
| |
|
||||||||| | ||||||||||||| ||||||||| ||||| | ||||||||||||||| |
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|
| T |
20001140 |
tcgagagtggaaactgagagccatattggtttccatctcttagagaggatgcttgtggc |
20001198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 210
Target Start/End: Complemental strand, 6687301 - 6687168
Alignment:
| Q |
80 |
tgaaatcgagagtgaagactgagagccataatggtttccacctcttggggaggatgcttgtggcgacgg---tgtctttggttgggagaatggagagaat |
176 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||||||||| | ||||||||||||| |||| |||||||| |
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|
| T |
6687301 |
tgaaatcgagagttaagactgagagccataatggtttccatctcttcgagaggatgcttgtggcgacagtactgtctttggttggaagaaatgagagaat |
6687202 |
T |
|
| Q |
177 |
gtgatagataatcgagtccagaagggagctaacc |
210 |
Q |
| |
|
||| | ||||| |||| |||||||||||||| |
|
|
| T |
6687201 |
atgacaaataattgagtatggaagggagctaacc |
6687168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 56164527 - 56164454
Alignment:
| Q |
103 |
agccataatggtttccacctcttggggaggatgcttgtggcgacggtgtctttggttgggagaatggagagaat |
176 |
Q |
| |
|
||||||||||| |||||| ||| | ||||| |||||||||||| | ||||||||||||||||| |||||||| |
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| T |
56164527 |
agccataatggattccactgcttcgagaggacgcttgtggcgaccgagtctttggttgggagaaaagagagaat |
56164454 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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