View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18522_low_38 (Length: 311)
Name: NF18522_low_38
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_38 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 9 - 311
Target Start/End: Complemental strand, 1274273 - 1273971
Alignment:
| Q |
9 |
gagaagaataagttggtgtgagtaagtatagtagttaaggttgccgtttgtgtaagcaagtgaataaaatgaatgaaagagacataaaaaacattgatag |
108 |
Q |
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| T |
1274273 |
gagaagaataagttggtgtgagtaagtatagtagttaaggttgccgtttgtgtaagcaagtgaataaaatgaatgaaagagacataaaaaacattgatag |
1274174 |
T |
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| Q |
109 |
attagaaataacagatactagtactatactattaagatggttagtactattttcacttcatcataataatttctatgaattcatcaaagtgagagaaaga |
208 |
Q |
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| T |
1274173 |
attagaaataacagatactagtactatactattaagatggttagtactattttcacttcatcataataatttctatgaattcatcaaagtgagagaaaga |
1274074 |
T |
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| Q |
209 |
gaccaaaacaggaaaaaggtactatacaggtgaatgtaatcaatgcaatcaataaggtcaataatataaagattattttatattgagtttattgagatgc |
308 |
Q |
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| T |
1274073 |
gaccaaaacaggaaaaaggtactatacaggtgaatgtaatcaatgcaatcaataaggtcaataatataaagattattttatatagagtttattgagatgc |
1273974 |
T |
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| Q |
309 |
aaa |
311 |
Q |
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| T |
1273973 |
aaa |
1273971 |
T |
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