View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18522_low_39 (Length: 311)

Name: NF18522_low_39
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18522_low_39
NF18522_low_39
[»] chr5 (3 HSPs)
chr5 (5-295)||(2588258-2588548)
chr5 (3-37)||(40899804-40899838)
chr5 (1-37)||(41062348-41062384)
[»] chr1 (4 HSPs)
chr1 (104-200)||(18618520-18618616)
chr1 (106-200)||(24035171-24035265)
chr1 (104-181)||(3550542-3550619)
chr1 (5-37)||(16395245-16395277)
[»] chr4 (4 HSPs)
chr4 (105-193)||(39734570-39734657)
chr4 (130-200)||(21327892-21327962)
chr4 (124-201)||(36186495-36186572)
chr4 (5-37)||(49428544-49428576)
[»] chr7 (7 HSPs)
chr7 (129-200)||(39825913-39825984)
chr7 (103-165)||(37492708-37492770)
chr7 (5-38)||(759295-759328)
chr7 (1-34)||(28202509-28202542)
chr7 (5-37)||(3178405-3178437)
chr7 (5-37)||(26973920-26973952)
chr7 (5-37)||(38391645-38391677)
[»] chr8 (2 HSPs)
chr8 (106-200)||(40395553-40395648)
chr8 (131-181)||(13854147-13854197)
[»] chr6 (5 HSPs)
chr6 (95-141)||(32785749-32785795)
chr6 (100-170)||(9624880-9624950)
chr6 (5-38)||(29363189-29363222)
chr6 (5-37)||(11143782-11143814)
chr6 (5-37)||(32440843-32440875)
[»] scaffold0116 (1 HSPs)
scaffold0116 (104-140)||(5991-6027)
[»] scaffold0110 (1 HSPs)
scaffold0110 (5-37)||(1442-1474)
[»] chr3 (1 HSPs)
chr3 (5-37)||(24569294-24569326)
[»] chr2 (2 HSPs)
chr2 (125-181)||(14395148-14395204)
chr2 (5-37)||(34451527-34451559)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 295
Target Start/End: Original strand, 2588258 - 2588548
Alignment:
Q  5 taaagagacaattattgtgagatggagggagtagatcgacgttttttctaaatattttagttcttttttggaaaaactaaaagaataatattaagttatg 104  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2588258 taaagagacaattattgtgagacggagggagtagatcgacgttttttctaaatattttagttcttttttggaaaaactaaaagaataatattaagttatg 2588357  T
Q  105 ggtcatgctaacttatgttcttatgacacatgttaagaattttattagtggtaaatatttactatgaaaaattaattcttaacttcttgaaaaatacaag 204  Q
    | ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2588358 gatcatgctaacttatgttcttaggacacatgttaagaatttcattagtggtaaatatttactatgaaaaattaattcttaacttcttgaaaaatacaag 2588457  T
Q  205 agttgcttaacatatgtctattttagatatcttaacatgtgttttaaaagcacaagttagtataagttatttacaaaagtttgcacaaaaa 295  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||| |||||||||||    
T  2588458 agtttcttaacatgtgtctattttagatatcttaacatgtgttttaaaaggacaagtttgtataagttattaacaaaagcttgcacaaaaa 2588548  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 40899838 - 40899804
Alignment:
Q  3 gataaagagacaattattgtgagatggagggagta 37  Q
    |||||||||||||||||||||||| ||||||||||    
T  40899838 gataaagagacaattattgtgagacggagggagta 40899804  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 41062348 - 41062384
Alignment:
Q  1 tggataaagagacaattattgtgagatggagggagta 37  Q
    |||||||| |||||||||||||||||||| |||||||    
T  41062348 tggataaaaagacaattattgtgagatggtgggagta 41062384  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 18618520 - 18618616
Alignment:
Q  104 gggtcatgctaacttatgttcttatgacacatgttaagaattttattagtggtaaatatttactatgaaaaattaattcttaacttcttgaaaaata 200  Q
    ||||||| |||||||||| ||||| | ||||| ||||||||| ||||| | | ||||||||| |||||||||||||||||||||||||||| |||||    
T  18618520 gggtcatactaacttatgctcttaaggcacatattaagaattctattaatagcaaatatttattatgaaaaattaattcttaacttcttgagaaata 18618616  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 24035171 - 24035265
Alignment:
Q  106 gtcatgctaacttatgttcttatgacacatgttaagaattttattagtggtaaatatttactatgaaaaattaattcttaacttcttgaaaaata 200  Q
    |||||||||||||||||||||| | ||||| |||||||||| |||| |  |||||||||| | ||||||||||||||||||||| |||| |||||    
T  24035171 gtcatgctaacttatgttcttagggcacatattaagaatttcattaataataaatatttattgtgaaaaattaattcttaactttttgagaaata 24035265  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 3550542 - 3550619
Alignment:
Q  104 gggtcatgctaacttatgttcttatgacacatgttaagaattttattagtggtaaatatttactatgaaaaattaatt 181  Q
    |||||||||||| || || ||||| ||||||| |||||||||  |||| | | ||||||||| ||||||||| |||||    
T  3550542 gggtcatgctaagttgtgatcttaagacacattttaagaattccattaatagcaaatatttattatgaaaaactaatt 3550619  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 16395245 - 16395277
Alignment:
Q  5 taaagagacaattattgtgagatggagggagta 37  Q
    |||||||||||||||||||||| ||||||||||    
T  16395245 taaagagacaattattgtgagacggagggagta 16395277  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 39734570 - 39734657
Alignment:
Q  105 ggtcatgctaacttatgttcttatgacacatgttaagaattttattagtggtaaatatttactatgaaaaattaattcttaacttcttg 193  Q
    |||||||||||||| |||||||| || |||||||||||||||||||| | ||||||||||| ||| |||||||||||  ||||||||||    
T  39734570 ggtcatgctaacttgtgttctta-gaaacatgttaagaattttattaatagtaaatatttattataaaaaattaatttctaacttcttg 39734657  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 21327892 - 21327962
Alignment:
Q  130 acacatgttaagaattttattagtggtaaatatttactatgaaaaattaattcttaacttcttgaaaaata 200  Q
    |||||||||||||||| | | | | ||||||||||| ||||||||||||||| | ||||||||||||||||    
T  21327892 acacatgttaagaattctgtaaatagtaaatatttattatgaaaaattaattttcaacttcttgaaaaata 21327962  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 36186495 - 36186572
Alignment:
Q  124 cttatgacacatgttaagaattttattagtggtaaatatttactatgaaaaattaattcttaacttcttgaaaaatac 201  Q
    |||| ||||||| |||||||||  |||| | | ||||||||| ||||| |||||||||||||||||||||| ||||||    
T  36186495 cttacgacacatattaagaattcaattaatagcaaatatttattatgagaaattaattcttaacttcttgataaatac 36186572  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 49428544 - 49428576
Alignment:
Q  5 taaagagacaattattgtgagatggagggagta 37  Q
    |||||||||||||||||||||| ||||||||||    
T  49428544 taaagagacaattattgtgagacggagggagta 49428576  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 39825984 - 39825913
Alignment:
Q  129 gacacatgttaagaattttattagtggtaaatatttactatgaaaaattaattcttaacttcttgaaaaata 200  Q
    |||||||||||||||||| |||| | | ||||||||| ||| |||| ||||||||||||||||||| |||||    
T  39825984 gacacatgttaagaatttcattaatagcaaatatttattataaaaatttaattcttaacttcttgagaaata 39825913  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 37492770 - 37492708
Alignment:
Q  103 tgggtcatgctaacttatgttcttatgacacatgttaagaattttattagtggtaaatattta 165  Q
    |||||||||||||||| |||  ||| ||||||||||||| ||||||| | || ||||||||||    
T  37492770 tgggtcatgctaacttgtgtctttaggacacatgttaaggattttataaatgataaatattta 37492708  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 759295 - 759328
Alignment:
Q  5 taaagagacaattattgtgagatggagggagtag 38  Q
    |||||||||||||||||||||| |||||||||||    
T  759295 taaagagacaattattgtgagacggagggagtag 759328  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 28202509 - 28202542
Alignment:
Q  1 tggataaagagacaattattgtgagatggaggga 34  Q
    |||||||||||||||||||||||||| |||||||    
T  28202509 tggataaagagacaattattgtgagacggaggga 28202542  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 3178405 - 3178437
Alignment:
Q  5 taaagagacaattattgtgagatggagggagta 37  Q
    |||||||||||||||||||||| ||||||||||    
T  3178405 taaagagacaattattgtgagacggagggagta 3178437  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 26973952 - 26973920
Alignment:
Q  5 taaagagacaattattgtgagatggagggagta 37  Q
    |||||||||||||||||||||| ||||||||||    
T  26973952 taaagagacaattattgtgagacggagggagta 26973920  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 38391677 - 38391645
Alignment:
Q  5 taaagagacaattattgtgagatggagggagta 37  Q
    |||||||||||||||||||||| ||||||||||    
T  38391677 taaagagacaattattgtgagacggagggagta 38391645  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 40395553 - 40395648
Alignment:
Q  106 gtcatgctaacttatgttcttatgacacatgttaagaattttattagtggtaaatatttactat-gaaaaattaattcttaacttcttgaaaaata 200  Q
    |||||||||||||| ||||||| | |||||||||||||||  |||| |  ||||||| || |||  |||||||||| ||||||||| |||||||||    
T  40395553 gtcatgctaacttaggttcttagggcacatgttaagaattccattaataataaatatctattataaaaaaattaatccttaacttcatgaaaaata 40395648  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 13854197 - 13854147
Alignment:
Q  131 cacatgttaagaattttattagtggtaaatatttactatgaaaaattaatt 181  Q
    ||||||||||||||| ||||| | | ||||||||| |||||||||||||||    
T  13854197 cacatgttaagaattctattaatagcaaatatttattatgaaaaattaatt 13854147  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 32785749 - 32785795
Alignment:
Q  95 ttaagttatgggtcatgctaacttatgttcttatgacacatgttaag 141  Q
    |||| |||||||||||||||||||||||||||  |||||||||||||    
T  32785749 ttaatttatgggtcatgctaacttatgttctttggacacatgttaag 32785795  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 9624880 - 9624950
Alignment:
Q  100 ttatgggtcatgctaacttatgttcttatgacacatgttaagaattttattagtggtaaatatttactatg 170  Q
    |||| ||| |||||||||| ||  ||||||||||||||||| ||||| |||| | ||||||||||| ||||    
T  9624880 ttataggtgatgctaacttgtgcccttatgacacatgttaaaaatttcattaatagtaaatatttattatg 9624950  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 29363222 - 29363189
Alignment:
Q  5 taaagagacaattattgtgagatggagggagtag 38  Q
    |||||||||||||||||||||| |||||||||||    
T  29363222 taaagagacaattattgtgagacggagggagtag 29363189  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 11143782 - 11143814
Alignment:
Q  5 taaagagacaattattgtgagatggagggagta 37  Q
    |||| ||||||||||||||||||||||||||||    
T  11143782 taaaaagacaattattgtgagatggagggagta 11143814  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 32440843 - 32440875
Alignment:
Q  5 taaagagacaattattgtgagatggagggagta 37  Q
    |||||||||||||||||||||| ||||||||||    
T  32440843 taaagagacaattattgtgagacggagggagta 32440875  T

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Target: scaffold0116 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 5991 - 6027
Alignment:
Q  104 gggtcatgctaacttatgttcttatgacacatgttaa 140  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  5991 gggtcatgttaacttatgttcttaggacacatgttaa 6027  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 1474 - 1442
Alignment:
Q  5 taaagagacaattattgtgagatggagggagta 37  Q
    |||||||||||||||||||||| ||||||||||    
T  1474 taaagagacaattattgtgagacggagggagta 1442  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 24569294 - 24569326
Alignment:
Q  5 taaagagacaattattgtgagatggagggagta 37  Q
    |||||||||||||||||||||| ||||||||||    
T  24569294 taaagagacaattattgtgagacggagggagta 24569326  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 14395204 - 14395148
Alignment:
Q  125 ttatgacacatgttaagaattttattagtggtaaatatttactatgaaaaattaatt 181  Q
    ||||| ||||||||||| ||||||| | ||||||||||||| ||| ||| |||||||    
T  14395204 ttatggcacatgttaaggattttataaatggtaaatatttattataaaatattaatt 14395148  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 34451527 - 34451559
Alignment:
Q  5 taaagagacaattattgtgagatggagggagta 37  Q
    |||||||||||||||| ||||||||||||||||    
T  34451527 taaagagacaattattttgagatggagggagta 34451559  T

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