View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18522_low_40 (Length: 302)
Name: NF18522_low_40
Description: NF18522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18522_low_40 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 1492916 - 1492644
Alignment:
| Q |
12 |
atgaaatgaaactattactttgtgtttggttctgtaatgataaaaattgatttctactaggttttagttgaaatgaaaataaattatgtttaaactcatt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1492916 |
atgaaatgaaactattactttgtgtttggttctatgatgataaaaattgatttctactaggttttagttgaaatgaaaataaattatgtttgaactcatt |
1492817 |
T |
|
| Q |
112 |
catgtaaaagtaagttggacnnnnnnntcaaaatataatttagagacaaagctttgaattcttacttacaattagaatcaattcaaaaatccaaattaat |
211 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
1492816 |
catgtaaaagttagttggacaataaaatcaaaataaaatttagagacaaagctttgaattcttacttacaattagaatcgattcaaaaagccaaattaat |
1492717 |
T |
|
| Q |
212 |
tataattgagaatactcaaacataaatatcaaacatgtattagttgtgtgctaccacatgatgcattgctaat |
284 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1492716 |
tataattgagaatattcaaacataaatatcaaacatgtattagttgtgtgctaccacatgatacattgctaat |
1492644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University